Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_021806.1 Length=100418 Score E Sequences producing significant alignments: (Bits) Value seq114946 107 1e-18 seq17591 107 1e-18 >seq114946 Length=1474 Score = 107 bits (118), Expect = 1e-18 Identities = 134/182 (74%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 96213 AGCTACTTGTTTAATCATTTGAGCACCTAAGTTTTCAAATGGATCTTCTAAATGAATTTC 96272 ||| |||| |||| |||||||||||| | |||||||| ||||| ||| | |||||| Sbjct 1159 AGCCACTTCCTTAACCATTTGAGCACCCATATTTTCAAACTTATCTTTTAACTCAATTTC 1100 Query 96273 TCTAGCCACACTTACACCATCTTTAGTAATGATTGGATTA--TACTGGTCTAAACCTAGT 96330 | |||| ||||| ||||| |||||||||| ||||| | | || | | | ||| | Sbjct 1099 TTTAGCGACACTCACACCGTCTTTAGTAACAGTTGGAGCACCAAATGATTT--ATCTAAT 1042 Query 96331 ATAACATTCTTACCTGATGGTCCTAGAGTTACTTTAACTGCATTAGCTAAAGCATCTACA 96390 | |||||| |||| || || | |||||| || || || || |||||| |||||||| Sbjct 1041 ACAACATTGCGACCTTTAGGGCCCAAAGTTACCTTCACGGCGTTTGCTAAAACATCTACA 982 Query 96391 CC 96392 || Sbjct 981 CC 980 >seq17591 Length=9458 Score = 107 bits (118), Expect = 1e-18 Identities = 134/182 (74%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 96213 AGCTACTTGTTTAATCATTTGAGCACCTAAGTTTTCAAATGGATCTTCTAAATGAATTTC 96272 ||| |||| |||| |||||||||||| | |||||||| ||||| ||| | |||||| Sbjct 2412 AGCCACTTCCTTAACCATTTGAGCACCCATATTTTCAAACTTATCTTTTAACTCAATTTC 2471 Query 96273 TCTAGCCACACTTACACCATCTTTAGTAATGATTGGATTA--TACTGGTCTAAACCTAGT 96330 | |||| ||||| ||||| |||||||||| ||||| | | || | | | ||| | Sbjct 2472 TTTAGCGACACTCACACCGTCTTTAGTAACAGTTGGAGCACCAAATGATTT--ATCTAAT 2529 Query 96331 ATAACATTCTTACCTGATGGTCCTAGAGTTACTTTAACTGCATTAGCTAAAGCATCTACA 96390 | |||||| |||| || || | |||||| || || || || |||||| |||||||| Sbjct 2530 ACAACATTGCGACCTTTAGGGCCCAAAGTTACCTTCACGGCGTTTGCTAAAACATCTACA 2589 Query 96391 CC 96392 || Sbjct 2590 CC 2591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 320449088863396