Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq194522 154 1e-32 seq31536 154 1e-32 seq168846 134 1e-26 >seq194522 Length=121325 Score = 154 bits (170), Expect = 1e-32 Identities = 184/250 (74%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGG 34380 |||||||||||||| || | ||||| || | ||||||||| || || || | | Sbjct 13915 GTCTCCGGGTTGTCGCACGAGGCACACAGGACGTAGCGGCGGATGAACCCGTCTAGGATG 13974 Query 34381 TCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCG 34440 ||||| | ||| | | || |||| ||||||||| ||| | || || || || || Sbjct 13975 TCCTGCAGCTTCGCCGCCTCATGGGCGCCGTTGACAATGTAGCGGTCATTCTTTGCGTCC 14034 Query 34441 ACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGT 34500 | ||| || || ||||||||||||||||| |||||||| |||||||| ||| || || Sbjct 14035 AGCTGGGTCTGGGCGCCCAGCTCGCACCCAAAGTACTTGGTCGGGTAGGTGGGTGGCCGG 14094 Query 34501 CCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTT 34560 || |||||||| | || | ||||||||| | || |||||||||||||||||||| Sbjct 14095 TTCAGTGCCTTGGCCACCTCTGACATGTTGACCAGCACCGTCTTGATGCCGTTGCCCTTG 14154 Query 34561 CCTTCGACCT 34570 || || |||| Sbjct 14155 CCCTCCACCT 14164 >seq31536 Length=57493 Score = 154 bits (170), Expect = 1e-32 Identities = 184/250 (74%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGG 34380 |||||||||||||| || | ||||| || | ||||||||| || || || | | Sbjct 45844 GTCTCCGGGTTGTCGCACGAGGCACACAGGACGTAGCGGCGGATGAACCCGTCTAGGATG 45785 Query 34381 TCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCG 34440 ||||| | ||| | | || |||| ||||||||| ||| | || || || || || Sbjct 45784 TCCTGCAGCTTCGCCGCCTCATGGGCGCCGTTGACAATGTAGCGGTCATTCTTTGCGTCC 45725 Query 34441 ACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGT 34500 | ||| || || ||||||||||||||||| |||||||| |||||||| ||| || || Sbjct 45724 AGCTGGGTCTGGGCGCCCAGCTCGCACCCAAAGTACTTGGTCGGGTAGGTGGGTGGCCGG 45665 Query 34501 CCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTT 34560 || |||||||| | || | ||||||||| | || |||||||||||||||||||| Sbjct 45664 TTCAGTGCCTTGGCCACCTCTGACATGTTGACCAGCACCGTCTTGATGCCGTTGCCCTTG 45605 Query 34561 CCTTCGACCT 34570 || || |||| Sbjct 45604 CCCTCCACCT 45595 >seq168846 Length=10976 Score = 134 bits (148), Expect = 1e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 34364 TGAAACCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATC 34423 |||| || || || | |||||| | ||| | | || |||| ||||||||| ||| | | Sbjct 712 TGAACCCGTCTAGGATGTCCTGCATCTTCGCCGCCTCATGGGCGCCGTTGACAATGTAGC 653 Query 34424 GTTCGTTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCG 34483 | || || || || | ||| || || ||||||||||||||||| |||||||| |||| Sbjct 652 GGTCATTCTTTGCGTCCAGCTGGGTCTGGGCGCCCAGCTCGCACCCAAAGTACTTGGTCG 593 Query 34484 GGTAAATGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCT 34543 |||| ||| || || || |||||||| | || | ||||||||| | || |||| Sbjct 592 GGTAGGTGGGTGGCCGGTTCAGTGCCTTGGCCACCTCTGACATGTTGACCAGCACCGTCT 533 Query 34544 TGATGCCGTTGCCCTTTCCTTCGACCT 34570 |||||||||||||||| || || |||| Sbjct 532 TGATGCCGTTGCCCTTGCCCTCCACCT 506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 411860033488412