Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq115183 172 9e-38 seq121756 143 4e-29 seq121950 89.7 8e-13 >seq115183 Length=152922 Score = 172 bits (190), Expect = 9e-38 Identities = 354/510 (69%), Gaps = 16/510 (3%) Strand=Plus/Minus Query 35452 GGGTCACACCCGTCTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGT 35511 |||| || || ||| || || ||||| |||||||| || |||||| | |||||| Sbjct 132683 GGGTAACGCCTAGCTGACCTTGATATTTGCCGCCGCGGTCGCGGTACGACACTTCGCACA 132624 Query 35512 CCTCGTCACTCTCGAAAAACAGCATCTGCGCCACACC-TTCGTTCGCGTACACACGCGCC 35570 | || || || || || |||| |||||| || ||||| ||| ||||| | ||| Sbjct 132623 CTTCATCGCTTTCAAAGAACAACATCTGTGC-ACACCCTTCACCGGCGTAAATCTTGGCC 132565 Query 35571 GGCAGGTTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGC 35630 ||||| ||| || ||| |||||||| || || || ||||||||||| ||||||||| Sbjct 132564 GGCAGCGGGGTGGTATTGGAAAACTCCAGGGTGACGTGGCCTTCCCACTCGGGTTCCAGC 132505 Query 35631 GGCGTCACGTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACG 35690 || || ||||| |||||||| || || || || || || || || |||| ||||| Sbjct 132504 GGAGTTACGTTCACGATGATGCCGCAACGGGCATAAGTACTTTTGCCCAGACACATGGTC 132445 Query 35691 AGGACGTTGCGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGC 35750 | || |||| ||||| |||||||| || |||||||| ||||| ||||| || ||| Sbjct 132444 AACACACTGCGAGGAATACGGAAGTACTCAACCGTGCGGGCCAGCGCGAAAGAATTGGGC 132385 Query 35751 GGAATCA-GGATGC-TGTCAGCCTTAACCGGCTGCAGGCACTTGGGATCGAAGTTCTTCG 35808 ||||| | | | | | | | | || | | | ||| | || ||||||| ||| | Sbjct 132384 GGAATAATGCACACATCACCGACGAAATCCAC-GAAGG-ATTTTTCATCGAAGGCCTTGG 132327 Query 35809 GATCAACCACTGCGCTGTTGATGTTGGTGAAGACTTCCCACTCATCGGCAGCACGCACGT 35868 | || || | | ||||||||||||||| | | | || | |||| |||||| | Sbjct 132326 GGTCCACGATGGTCGAGTTGATGTTGGTGAAAATCTTGAATTCGTTGGCACAACGCACAT 132267 Query 35869 CATAACCATACGACGAGTTGCCGTA--CGA-GATAACGTGCTGACCGTCGATGTTGCGCA 35925 | || ||||| | ||||||| || ||| |||| || ||||| | ||||||| Sbjct 132266 CGTAGCCATAGCTGCTGGTGCCGTAGCTGACGAT-ACGT--TGTCCGTCTACATTGCGCA 132210 Query 35926 CTTGCGACT--CTTGAAAGGGTTCGATCAT 35953 |||| | || || |||| || |||||||| Sbjct 132209 CTTG-GCCTGGCTCGAAA-GGCTCGATCAT 132182 >seq121756 Length=20875 Score = 143 bits (158), Expect = 4e-29 Identities = 225/319 (71%), Gaps = 10/319 (3%) Strand=Plus/Minus Query 35580 GTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGCGTCACG 35639 || ||||| ||| ||||| ||||| || || ||||| | || |||||||| || ||| Sbjct 17619 GTGGTGTTCGAGAATTCCAGCGTCACGTGCCCCTCCCAGCCGGGCTCCAGCGGTGTGACG 17560 Query 35640 TTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGGACGTTG 35699 || || ||||| || || ||||| ||||| || || | || | ||| || |||| | Sbjct 17559 TTCACAATGATGCCGCACCGCGCATAGGTCGATTTGCCGAGGCAGATCACCAGCACGTCG 17500 Query 35700 CGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGGAATCAGG 35759 ||||| | |||||| ||||| || || || ||||| |||||||||||||||||||| | Sbjct 17499 CGCGGCACGCGGAAATATTCCACGGTCCGCGCCAGCGCGAAGCTGTTCGGCGGAAT---G 17443 Query 35760 ATGC---TGTCAGCCTT--AACCGGCTGCAGGCACTTGGGATCGAAGTTCTTCGGATCAA 35814 |||| ||| | ||| | || | | || || | |||| | ||| || || | Sbjct 17442 ATGCACACGTCGGTCTTGCGATCGAC--GAAGCTGTTCGCGGCGAAATCCTTGGGGTCGA 17385 Query 35815 CCACTGCGCTGTTGATGTTGGTGAAGACTTCCCACTCATCGGCAGCACGCACGTCATAAC 35874 ||| ||| | | || ||||||||| | | |||| |||||| | ||| ||||||| | Sbjct 17384 CCAGTGCATTATCGACGTTGGTGAAAATCTTGAACTCGTCGGCAACGCGCGCGTCATAGC 17325 Query 35875 CATACGACGAGTTGCCGTA 35893 | || || || |||||| Sbjct 17324 CGTAGGAGGACAGGCCGTA 17306 >seq121950 Length=5567 Score = 89.7 bits (98), Expect = 8e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 120228 GCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATC 120287 ||||| |||||||| |||||||||| |||| |||||||||| || | ||||||||||| Sbjct 3379 GCCGGCTTAGCTCAGATGGTAGAGCACCTGATTTGTAATCAGGGGGCCGCGGGTTCGATC 3320 Query 120288 CCTGATGCCGGCACCATATTCT 120309 |||| |||||||||| |||| Sbjct 3319 CCTGCAGCCGGCACCAGTTTCT 3298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 823902760587360