Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq48326 143 2e-29 seq9079 127 1e-24 seq74841 122 6e-23 seq4323 118 7e-22 seq176411 114 8e-21 >seq48326 Length=57257 Score = 143 bits (158), Expect = 2e-29 Identities = 162/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 || |||||| || |||| |||| ||||||||||||||| ||||| ||||| |||| | Sbjct 53313 CCGCAGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGATAGTGTGCGGCC 53254 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 || || || ||||||||||||||||| || || ||||| || | || | || ||||| Sbjct 53253 GTCTTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCTTCCTT 53194 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 ||| | || ||| ||||| | | || | ||| ||| |||||| || | || || Sbjct 53193 GTCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACTTCGAGCGTGAT 53134 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || || ||||| ||||| ||||| ||||||||| Sbjct 53133 GGTTTTACCGGTGAGTGTCTTGACAAAAATCTGCATG 53097 Score = 120 bits (132), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| || || ||||||||||| || || || || | || || || Sbjct 52853 AGCACAAGGTGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGACAGCGTACGGTCCTCA 52794 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| |||||||||||||| || |||||||| | || | || |||||||| Sbjct 52793 ---AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCC 52737 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| ||||| | | || | ||| | | ||| || || | || || || Sbjct 52736 TGAATTTTCGCCTTGACATTTTCAATAGTGTCACTAGGCTCAACTTCGAGCGTGATAGTT 52677 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 ||||||||||| ||||| ||||| ||||||||||| Sbjct 52676 TTTCCCGTGAGTGTCTTCACAAAAATCTGCATGAT 52642 Score = 120 bits (132), Expect = 2e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | |||| ||| ||||| ||||| |||||||| || |||| | || Sbjct 53082 CAGCACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGTGTGCGGCCGTC 53023 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| ||||| ||||| || || ||||||||| | || | ||||||||||| Sbjct 53022 CTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGTGGAATTCCCTCCTTGTC 52963 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || ||| ||| ||| | |||| || ||| || || || | || || || Sbjct 52962 TTGGATCTTTGCTTTTACGTTCTCGATCGTGTCGCTGGGTTCAACTTCCAGCGTGATTGT 52903 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || || | ||||| ||||||||||||||| Sbjct 52902 CTTGCCAGTCAAAGTCTTGACAAAGATCTGCATG 52869 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 || |||||| ||||| | ||| ||||||||||| || ||||| || || | ||| | Sbjct 53769 CCGCAGGACAAGGTGGAGGGTCGATTCCTTCTGAATATTGTAGTCGGAGAGAGTACGCCC 53710 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||| |||| ||||| || || ||||| || || || ||||| | || | |||||||| Sbjct 53709 ATCTTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCCGGTGGAATGCCCTCCTT 53650 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 ||| | ||||| || || | | || | || | | ||| || || | |||||| Sbjct 53649 GTCCTGGATTTTAGCCTTCACATTTTCGATGGTGTCGCTAGGCTCAACCTCCAGGGTTAT 53590 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || ||||||||||| || ||||||||||| Sbjct 53589 GGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 53554 >seq9079 Length=83715 Score = 127 bits (140), Expect = 1e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| || || ||||||||||| || || || || | || | || Sbjct 3351 AGCACAAGGTGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGACAGCGTACGGCCGTCC 3410 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| |||||||||||||| || |||||||| | || | || |||||||| Sbjct 3411 TCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCC 3470 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| ||||| | | || | ||| | | ||| || || | || || || Sbjct 3471 TGAATTTTCGCCTTGACATTTTCAATGGTGTCACTCGGCTCAACTTCGAGCGTGATAGTT 3530 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 ||||||||||| ||||| ||||| ||||||||||| Sbjct 3531 TTTCCCGTGAGTGTCTTCACAAAAATCTGCATGAT 3565 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 || |||||| ||||| | ||| ||||||||||| || ||||| || || ||||| | Sbjct 2435 CCGCAGGACAAGGTGGAGGGTCGATTCCTTCTGAATATTGTAGTCGGAGAGAGTGCGCCC 2494 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 || |||| ||||| || || ||||| || || || ||||| | || | |||||||| Sbjct 2495 GTCCTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCCGGTGGAATGCCCTCCTT 2554 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 ||| | ||||| || || | | || | || | | ||| || || | |||||| Sbjct 2555 GTCCTGGATTTTAGCCTTCACATTTTCGATGGTGTCGCTAGGCTCAACCTCTAGGGTTAT 2614 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || ||||||||||| || ||||||||||| Sbjct 2615 GGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 2650 Score = 116 bits (128), Expect = 2e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | |||| ||| ||||||||||| ||||| || || |||| | || Sbjct 2894 CAGCACCAAGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGTGTGCGGCCGTC 2953 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| ||||| ||||| || || |||||||| | || | ||||||||||| Sbjct 2954 CTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 3013 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || ||| ||||||| | |||| ||| ||| || || || | || || || Sbjct 3014 TTGGATCTTTGCTTTGACGTTCTCGATCGTGTCACTGGGTTCAACTTCTAGCGTGATCGT 3073 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || || | ||||| || |||||||||||| Sbjct 3074 TTTGCCAGTCAAAGTCTTGACGAAGATCTGCATG 3107 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| ||| ||||||||||| ||||| || || | || | || Sbjct 3123 AGCACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGTGTACGGCCGTCC 3182 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || || || || ||||| || || ||||||||| | || | ||||||||||| Sbjct 3183 TCGAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCT 3242 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| ||| ||| | |||| || ||| || || || | || || ||| Sbjct 3243 TGGATCTTTGCTTTTACGTTCTCGATCGTGTCGCTGGGTTCAACTTCCAGCGTGATCGTC 3302 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || || | ||||| ||||||||||||||| Sbjct 3303 TTGCCAGTCAAAGTCTTGACAAAGATCTGCATG 3335 >seq74841 Length=4471 Score = 122 bits (134), Expect = 6e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 || |||||| ||||| | ||| |||||||||||||| || || || || |||| | Sbjct 3204 CCGCAGGACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCC 3145 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 || |||| ||||| || || ||||| || || || |||||| | || | |||||||| Sbjct 3144 GTCCTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTT 3085 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 ||| | ||||| || || | || | || ||| |||||| || | |||||| Sbjct 3084 GTCCTGGATTTTAGCCTTCACATTTTTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTAT 3025 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||||| || ||||||||||| || ||||| |||||| Sbjct 3024 GGTCTTGCCGGTGAGGGTCTTAACGAAGATTTGCATG 2988 >seq4323 Length=113087 Score = 118 bits (130), Expect = 7e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||| |||||||||||||| || || || || |||| | || Sbjct 36911 AGGACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCC 36970 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || || ||||| || || || |||||| | || | ||||||||||| Sbjct 36971 TCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCC 37030 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| || || | || | || ||| |||||| || | |||||||||| Sbjct 37031 TGGATTTTAGCCTTCACATTTTTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTC 37090 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || ||||||||||| || ||||| |||||| Sbjct 37091 TTGCCGGTGAGGGTCTTAACGAAGATTTGCATG 37123 >seq176411 Length=6678 Score = 114 bits (126), Expect = 8e-21 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 || |||||| ||||| | ||| |||||||||||||| || || | || |||| | Sbjct 4810 CCGCAGGACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCGGCGAGAGTGCGGCC 4869 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 || |||| ||||| || || ||||| || || || |||||| | || | |||||||| Sbjct 4870 GTCCTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTT 4929 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 ||| | ||||| || || | || | || ||| |||||| || | |||||| Sbjct 4930 GTCCTGGATTTTAGCCTTCACATTTTTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTAT 4989 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || ||||||||||| || ||||| ||||| Sbjct 4990 GGTCTTGCCGGTGAGGGTCTTAACGAAGATTTGCAT 5025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324918437276996