Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_022753.1 Length=52282 Score E Sequences producing significant alignments: (Bits) Value seq115184 80.6 9e-11 seq115180 80.6 9e-11 >seq115184 Length=93111 Score = 80.6 bits (88), Expect = 9e-11 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 4062 TAGCTCAGTCGGCAGAGCTACGGACTCTTAATCCGCAGGTCGCAGGTTCGATCCCTG 4118 |||||||||||| ||||| ||||||| |||||||||||||| ||||||||| ||||| Sbjct 21405 TAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAGGTCCCAGGTTCGAGCCCTG 21461 Score = 80.6 bits (88), Expect = 9e-11 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 4062 TAGCTCAGTCGGCAGAGCTACGGACTCTTAATCCGCAGGTCGCAGGTTCGATCCCTG 4118 |||||||||||| ||||| ||||||| |||||||||||||| ||||||||| ||||| Sbjct 23432 TAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAGGTCCCAGGTTCGAGCCCTG 23488 >seq115180 Length=148627 Score = 80.6 bits (88), Expect = 9e-11 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 4062 TAGCTCAGTCGGCAGAGCTACGGACTCTTAATCCGCAGGTCGCAGGTTCGATCCCTG 4118 |||||||||||| ||||| ||||||| |||||||||||||| ||||||||| ||||| Sbjct 110234 TAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAGGTCCCAGGTTCGAGCCCTG 110290 Score = 80.6 bits (88), Expect = 9e-11 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 4062 TAGCTCAGTCGGCAGAGCTACGGACTCTTAATCCGCAGGTCGCAGGTTCGATCCCTG 4118 |||||||||||| ||||| ||||||| |||||||||||||| ||||||||| ||||| Sbjct 112261 TAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAGGTCCCAGGTTCGAGCCCTG 112317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166793505197152