Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_022976.1 Length=75894 Score E Sequences producing significant alignments: (Bits) Value seq122023 221 6e-53 seq121528 98.7 5e-16 >seq122023 Length=4177 Score = 221 bits (244), Expect = 6e-53 Identities = 512/769 (67%), Gaps = 11/769 (1%) Strand=Plus/Minus Query 66089 TTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCC 66148 || |||||||| | ||| |||| ||| || ||| |||| || ||| | || | Sbjct 3471 TTTCCACCGGCAGTCTCGGGTTGGATATCGCGCTTGGCGTCGGCGGCCTGCCGCGCGGGC 3412 Query 66149 GGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGG 66208 || | || || || ||||| || ||| || || ||| | || || ||||| || Sbjct 3411 GGATCGTCGAGATTTACGGGCCGGAAAGCTCGGGCAAGACCACGCTCGCGCTCCATGCCA 3352 Query 66209 TGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGG 66268 | || | ||||||||| || || | || || | | |||| || || || | || | Sbjct 3351 TCGCGGAGGCGCAGAAGCTTGGCGGGACGGCGGCGTTCGTCGATGCCGAACATGCGCTCG 3292 Query 66269 ACCCCGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGG 66328 | || | || |||||| |||||| || ||| || || | | | | ||||| | Sbjct 3291 ATCCGGTCTATGCCAAGAAGCTCGGCGTCGACATCAACGAGATGATCATCTCGCAGCCCG 3232 Query 66329 ACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCA 66388 | || || |||||||| ||||||||||| || | || || || | | | Sbjct 3231 ATACCGGTGAGCAGGCGCTGGAGATCGTCGATACTTTGGTGCGCTCGAACGCGATCGACG 3172 Query 66389 TCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCG 66448 | | || | || || || || || || ||||||||||||||| |||| ||||| || | Sbjct 3171 TGCTGGTGATCGATTCGGTCGCCGCGCTCGTGCCGCGCGCCGAGATCGAGGGCGAGATGG 3112 Query 66449 GGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCG 66508 | ||||| || |||||||| || |||||||| ||| ||||| |||||||||| |||| Sbjct 3111 GCGACAGCCATGTCGGCCTCCAGGCGCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCG 3052 Query 66509 GCACCATCTCCAGCACCAACACGCTGACGC----TCTGGGTCAACCAGTTGCGCGAGAAG 66564 |||| || |||| | | ||||| | | ||| |||||||| | ||| |||| Sbjct 3051 GCACGAT---CAGC-CGCTCGCGCTGCCTCGTCATCTTCATCAACCAGATCCGCATGAAG 2996 Query 66565 ATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGAGGTTC 66624 ||||| |||| |||||| || || || || || ||||| || || ||| ||| Sbjct 2995 ATCGG---CGTGATGTACGGCTCGCCCGAAACGACGACCGGCGGCAATGCGCTGAAATTC 2939 Query 66625 TACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCT 66684 |||||||| ||||| | ||| | || |||| || | | ||||| | || ||||| Sbjct 2938 TACGCCTCGGTCCGGCTCGATATTCGCCGCACCGGCTCGATCAAGGATCGTGACGAGGCG 2879 Query 66685 GTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAAC 66744 |||||||| ||| || || || |||||||||||| | ||||||||| | | Sbjct 2878 ATCGGCAACACGGTCCGCGTCAAGGTGGTCAAGAACAAGGTCGCCCCGCCGTTCAAGCAG 2819 Query 66745 GCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTG 66804 | ||||||| | || ||| ||| |||||||| || | ||| | ||||| || Sbjct 2818 GTCGAGTTCGACATCATGTTCGGCGAGGGCATTTCCAAGCTCGGCGAGGTGCTCGATCTC 2759 Query 66805 GCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACG 66853 | |||| | || ||||| | || ||||| | ||||||| |||| Sbjct 2758 GGCGTGAAGGCTGGGCTGGTCGAAAAATCGGGGTCGTGGTTCAGCTACG 2710 >seq121528 Length=3295 Score = 98.7 bits (108), Expect = 5e-16 Identities = 198/293 (68%), Gaps = 3/293 (1%) Strand=Plus/Plus Query 66561 GAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGAG 66620 |||||||||| ||| |||||| || || || || || ||||| || || ||| Sbjct 6 GAAGATCGGC---GTGATGTACGGCTCGCCCGAAACGACGACCGGCGGCAATGCGCTGAA 62 Query 66621 GTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGA 66680 ||||||||||| ||||| | ||| | || |||| || | | ||||| | || || Sbjct 63 ATTCTACGCCTCGGTCCGGCTCGATATTCGCCGCACCGGCTCGATCAAGGATCGTGACGA 122 Query 66681 GGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCGCCGCACCG 66740 ||| |||||||| ||| || || || |||||||||||| | ||||||||| | Sbjct 123 GGCGATCGGCAACACGGTCCGCGTCAAGGTGGTCAAGAACAAGGTCGCCCCGCCGTTCAA 182 Query 66741 CAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGA 66800 | | ||||||| | || ||| ||| |||||||| || | ||| | ||||| Sbjct 183 GCAGGTCGAGTTCGACATCATGTTCGGCGAGGGCATTTCCAAGCTCGGCGAGGTGCTCGA 242 Query 66801 CCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACG 66853 || | |||| | || ||||| | || ||||| | ||||||| |||| Sbjct 243 TCTCGGCGTGAAGGCTGGGCTGGTCGAAAAATCGGGGTCGTGGTTCAGCTACG 295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242158874224020