Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_022981.1 Length=76323 Score E Sequences producing significant alignments: (Bits) Value seq122023 230 1e-55 seq121528 107 9e-19 >seq122023 Length=4177 Score = 230 bits (254), Expect = 1e-55 Identities = 514/769 (67%), Gaps = 11/769 (1%) Strand=Plus/Minus Query 66345 TTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCC 66404 || |||||||| | ||| |||| ||| || ||| |||| || ||| | || | Sbjct 3471 TTTCCACCGGCAGTCTCGGGTTGGATATCGCGCTTGGCGTCGGCGGCCTGCCGCGCGGGC 3412 Query 66405 GGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGG 66464 || | || || || ||||| || ||| || || ||| | || || ||||| || Sbjct 3411 GGATCGTCGAGATTTACGGGCCGGAAAGCTCGGGCAAGACCACGCTCGCGCTCCATGCCA 3352 Query 66465 TGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGG 66524 | || | ||||||||| || || | || || | | |||| || || || | || | Sbjct 3351 TCGCGGAGGCGCAGAAGCTTGGCGGGACGGCGGCGTTCGTCGATGCCGAACATGCGCTCG 3292 Query 66525 ACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGG 66584 | || | || |||||| |||||| || ||| || || | | | | ||||| | Sbjct 3291 ATCCGGTCTATGCCAAGAAGCTCGGCGTCGACATCAACGAGATGATCATCTCGCAGCCCG 3232 Query 66585 ACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCA 66644 | || || |||||||| ||||||||||| || | || || || | | | Sbjct 3231 ATACCGGTGAGCAGGCGCTGGAGATCGTCGATACTTTGGTGCGCTCGAACGCGATCGACG 3172 Query 66645 TCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCG 66704 | | || | || || || || || || ||||||||||||||| |||| ||||| || | Sbjct 3171 TGCTGGTGATCGATTCGGTCGCCGCGCTCGTGCCGCGCGCCGAGATCGAGGGCGAGATGG 3112 Query 66705 GGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCG 66764 | ||||| || |||||||| || |||||||| ||| ||||| |||||||||| |||| Sbjct 3111 GCGACAGCCATGTCGGCCTCCAGGCGCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCG 3052 Query 66765 GCACCATCTCCAGCACCAACACGCTGACGC----TCTGGGTCAACCAGTTGCGCGAGAAG 66820 |||| || |||| | | ||||| | | ||| |||||||| | ||| |||| Sbjct 3051 GCACGAT---CAGC-CGCTCGCGCTGCCTCGTCATCTTCATCAACCAGATCCGCATGAAG 2996 Query 66821 ATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGCAAGGCTTTGAGGTTC 66880 ||||| |||| |||||| || || || || || |||||||| || ||| ||| Sbjct 2995 ATCGG---CGTGATGTACGGCTCGCCCGAAACGACGACCGGCGGCAATGCGCTGAAATTC 2939 Query 66881 TACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCT 66940 |||||||| ||||| | ||| | || |||| || | | ||||| | || ||||| Sbjct 2938 TACGCCTCGGTCCGGCTCGATATTCGCCGCACCGGCTCGATCAAGGATCGTGACGAGGCG 2879 Query 66941 GTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAAC 67000 |||||||| ||| || ||||| |||||||||||| | ||||||||| | | Sbjct 2878 ATCGGCAACACGGTCCGCGTCAAGGTGGTCAAGAACAAGGTCGCCCCGCCGTTCAAGCAG 2819 Query 67001 GCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTG 67060 | ||||||| | || ||| ||| |||||||| || | ||| | ||||| || Sbjct 2818 GTCGAGTTCGACATCATGTTCGGCGAGGGCATTTCCAAGCTCGGCGAGGTGCTCGATCTC 2759 Query 67061 GCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACG 67109 | |||| | || ||||| | || ||||| | ||||||| |||| Sbjct 2758 GGCGTGAAGGCTGGGCTGGTCGAAAAATCGGGGTCGTGGTTCAGCTACG 2710 >seq121528 Length=3295 Score = 107 bits (118), Expect = 9e-19 Identities = 200/293 (68%), Gaps = 3/293 (1%) Strand=Plus/Plus Query 66817 GAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGCAAGGCTTTGAG 66876 |||||||||| ||| |||||| || || || || || |||||||| || ||| Sbjct 6 GAAGATCGGC---GTGATGTACGGCTCGCCCGAAACGACGACCGGCGGCAATGCGCTGAA 62 Query 66877 GTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGA 66936 ||||||||||| ||||| | ||| | || |||| || | | ||||| | || || Sbjct 63 ATTCTACGCCTCGGTCCGGCTCGATATTCGCCGCACCGGCTCGATCAAGGATCGTGACGA 122 Query 66937 GGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCG 66996 ||| |||||||| ||| || ||||| |||||||||||| | ||||||||| | Sbjct 123 GGCGATCGGCAACACGGTCCGCGTCAAGGTGGTCAAGAACAAGGTCGCCCCGCCGTTCAA 182 Query 66997 CAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGA 67056 | | ||||||| | || ||| ||| |||||||| || | ||| | ||||| Sbjct 183 GCAGGTCGAGTTCGACATCATGTTCGGCGAGGGCATTTCCAAGCTCGGCGAGGTGCTCGA 242 Query 67057 CCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACG 67109 || | |||| | || ||||| | || ||||| | ||||||| |||| Sbjct 243 TCTCGGCGTGAAGGCTGGGCTGGTCGAAAAATCGGGGTCGTGGTTCAGCTACG 295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243528410273616