Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq9079 127 2e-24 seq48326 122 7e-23 >seq9079 Length=83715 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||||||||| || || ||||| ||||| |||||||| || || | | ||||| Sbjct 2892 CGCAGCACCAAGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGTGTGCGGCCG 2951 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || ||||| ||| | || | | ||||| || || || |||||||| ||| Sbjct 2952 TCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 3011 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | ||| |||||| | || | |||||| |||| ||||| || || || Sbjct 3012 TCTTGGATCTTTGCTTTGACGTTCTCGATCGTGTCACTGGGTTCAACTTCTAGCGTGATC 3071 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||||| || || || || || |||||||| Sbjct 3072 GTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 3106 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | || || || || | ||||| || || || ||||||||||| || || | Sbjct 2651 TCCTCCGCGCAGCCGGAGGACAAGGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGA 2710 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| || || || |||||||| ||| | || | | ||||||||| || || Sbjct 2711 CAGGGTGCGGCCGTCTTCTAGCTGTTTGCCCGCAAAGATAAGACGTTGCTGATCAGGTGG 2770 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || ||||| || | |||| |||||| |||| | |||||| | | || || Sbjct 2771 GATCCCTTCCTTGTCCTGGATTTTTGCCTTGACATTTTCAATGGTGTCACTAGGCTCGAC 2830 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || || ||||| || || | || || ||||| |||||||| Sbjct 2831 TTCGAGCGTGATGGTTTTACCGGTGAGTGTCTTGACAAAAATCTGCAT 2878 Score = 113 bits (124), Expect = 3e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||| | ||||| ||||| ||||| |||||||| || || | | || || Sbjct 3120 CGTAGCACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGTGTACGGCCG 3179 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| |||||||||||| | || | | ||||| || || ||||| ||||| ||| Sbjct 3180 TCCTCGAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATTCCCTCCTTG 3239 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | ||| ||| || | || | ||||| |||| ||||| || || || Sbjct 3240 TCTTGGATCTTTGCTTTTACGTTCTCGATCGTGTCGCTGGGTTCAACTTCCAGCGTGATC 3299 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| || || || ||||| |||||||| Sbjct 3300 GTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 3334 >seq48326 Length=57257 Score = 122 bits (134), Expect = 7e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||||||||| || || ||||| ||||| || ||||| || |||| || ||||| Sbjct 53084 CGCAGCACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGTGTGCGGCCG 53025 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || ||||| ||| | || | | ||||| || || ||||| ||||| ||| Sbjct 53024 TCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGTGGAATTCCCTCCTTG 52965 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | ||| ||| || | || | ||||| |||| ||||| || || || Sbjct 52964 TCTTGGATCTTTGCTTTTACGTTCTCGATCGTGTCGCTGGGTTCAACTTCCAGCGTGATT 52905 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| || || || ||||| |||||||| Sbjct 52904 GTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 52870 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| || | |||||| ||||| || || |||||||| || || | | ||||| Sbjct 53312 CGCAGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGATAGTGTGCGGCCG 53253 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || || || || | || | | ||||||||||| ||||| || || ||| Sbjct 53252 TCTTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCTTCCTTG 53193 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| |||||| |||| | |||||| | || ||||| || || || Sbjct 53192 TCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACTTCGAGCGTGATG 53133 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || | || || ||||| |||||||| Sbjct 53132 GTTTTACCGGTGAGTGTCTTGACAAAAATCTGCAT 53098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384303308126844