Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_023561.1 Length=173276 Score E Sequences producing significant alignments: (Bits) Value seq115184 86.0 7e-12 seq115180 86.0 7e-12 seq122314 82.4 8e-11 >seq115184 Length=93111 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 72104 TGGTGCCGGTTAACGGATTCGAACCGCTGACCCTCTCATTACAAATGAGCTGCTCTACCA 72163 |||||||| | || ||| ||||||| |||| ||||||||| |||||||||||||||| Sbjct 27863 TGGTGCCGATGAAAGGAATCGAACCCTCGACCTTCTCATTACGAATGAGCTGCTCTACCG 27804 Query 72164 ACTGAGCTAAACCGGCT 72180 ||||||||| | ||||| Sbjct 27803 ACTGAGCTACATCGGCT 27787 >seq115180 Length=148627 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 72104 TGGTGCCGGTTAACGGATTCGAACCGCTGACCCTCTCATTACAAATGAGCTGCTCTACCA 72163 |||||||| | || ||| ||||||| |||| ||||||||| |||||||||||||||| Sbjct 116692 TGGTGCCGATGAAAGGAATCGAACCCTCGACCTTCTCATTACGAATGAGCTGCTCTACCG 116633 Query 72164 ACTGAGCTAAACCGGCT 72180 ||||||||| | ||||| Sbjct 116632 ACTGAGCTACATCGGCT 116616 >seq122314 Length=30329 Score = 82.4 bits (90), Expect = 8e-11 Identities = 67/80 (84%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 74607 TTTGGTGACCCCAGCAGGACTCGAACCTGCAACCTAGCGATTATGAGTCGCGTGCTCTAA 74666 ||||||| ||| |||||||||||||| |||||||||| ||||||| || ||||||| Sbjct 11033 TTTGGTGGGCCCGGCAGGACTCGAACCCGCAACCTAGCCGTTATGAGCGGCCAGCTCTAA 11092 Query 74667 CCAATTGAGCTATAGGGCCA 74686 || ||||||||| ||| ||| Sbjct 11093 CC-ATTGAGCTACAGGCCCA 11111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553003377127040