Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_023581.1 Length=77792 Score E Sequences producing significant alignments: (Bits) Value seq115183 98.7 5e-16 >seq115183 Length=152922 Score = 98.7 bits (108), Expect = 5e-16 Identities = 156/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 37926 TGCCACCTTGTCATACATTGTTCCAGTTCTTTGTAGAGAATGGAAAACTAAGCTGTCAGT 37985 |||| || || || | |||||||||| | ||| | | || || ||| || ||| Sbjct 137707 TGCCCCCATGCCACGCCCTGTTCCAGTTTTATGTGGCAGACGGCAAGCTATCTTGCCAGC 137648 Query 37986 TATATCAACGTAGTGCTGATTTCTTCTTAGGTGTTCCATTTAATATTGCAAGCTATGCGT 38045 | || || || ||||| ||| | ||| | || || || || ||||| || ||||| || | Sbjct 137647 TCTACCAGCGCAGTGCCGATATTTTCCTGGGCGTGCCCTTCAATATCGCCAGCTACGCCT 137588 Query 38046 TGCTTACACATATCGTAGCTGCAG-AATGTGGATTAGAAGTTGGTGAATTTGTCTGGACT 38104 |||| || || || | || |||| |||||| | ||||| ||||| || |||||||| Sbjct 137587 TGCTGACTCACATGATGGC-GCAGCAATGTGATCTGGAAGTGGGTGATTTCATCTGGACT 137529 Query 38105 GGTGGTGTAGTTCACCTGTACAGTAATCACCTTGAGCAAGC 38145 ||||||| |||||||||| || ||| | || ||||| Sbjct 137528 GGTGGTGACTGTCACCTGTACTCCAACCACTTCGAACAAGC 137488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 248218033716172