Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_023690.1 Length=110569 Score E Sequences producing significant alignments: (Bits) Value seq122309 87.8 1e-12 seq121308 87.8 1e-12 >seq122309 Length=32212 Score = 87.8 bits (96), Expect = 1e-12 Identities = 126/177 (71%), Gaps = 3/177 (2%) Strand=Plus/Plus Query 97125 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 97184 ||||| || | ||||| | ||| || | || || ||||| || ||||||||||||| Sbjct 18394 CGGCAGATTCGCCTTGATCACGCCGGTAATGACGTCGACGGACGGGCGCTGCGTCGCCAT 18453 Query 97185 GACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGAC 97244 || ||| || || ||||| ||||||||||| || |||| ||| || | ||||| Sbjct 18454 GATGAGGTGGATGCCGGCGGCGCGCGCCTTTTGCGCGAGGCGCTGGATAAGGAATTCGAC 18513 Query 97245 TTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGAT 97301 || |||| | || |||||| || || || || |||||||| | ||| ||||| Sbjct 18514 CTC---CTTGCCGGCGGTCATCATCAGATCGGCCAGCTCGTCGACGATTACGACGAT 18567 >seq121308 Length=30306 Score = 87.8 bits (96), Expect = 1e-12 Identities = 126/177 (71%), Gaps = 3/177 (2%) Strand=Plus/Minus Query 97125 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 97184 ||||| || | ||||| | ||| || | || || ||||| || ||||||||||||| Sbjct 1371 CGGCAGATTCGCCTTGATCACGCCGGTAATGACGTCGACGGACGGGCGCTGCGTCGCCAT 1312 Query 97185 GACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGAC 97244 || ||| || || ||||| ||||||||||| || |||| ||| || | ||||| Sbjct 1311 GATGAGGTGGATGCCGGCGGCGCGCGCCTTTTGCGCGAGGCGCTGGATAAGGAATTCGAC 1252 Query 97245 TTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGAT 97301 || |||| | || |||||| || || || || |||||||| | ||| ||||| Sbjct 1251 CTC---CTTGCCGGCGGTCATCATCAGATCGGCCAGCTCGTCGACGATTACGACGAT 1198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 352855057253720