Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq139319 322 2e-82 seq118729 127 6e-24 seq195024 123 8e-23 seq122304 93.3 1e-13 seq121303 93.3 1e-13 >seq139319 Length=12334 Score = 322 bits (356), Expect = 2e-82 Identities = 782/1167 (67%), Gaps = 48/1167 (4%) Strand=Plus/Minus Query 188439 AAAGTCTAAAGAATTAAAATGTTCATTCTGTGGGAAGCCGCAAGAGCACGTTCGTAAATT 188498 ||| || ||| ||| | ||||| || ||||| || || | || ||||||||||| Sbjct 9832 AAAATCACAAGTTTTATATTGTTCGTTTTGTGGCAAAAGTCAGCATCAAGTTCGTAAATT 9773 Query 188499 AGTTGCAGGTCCAAATGTTCACATTTGTGATGAATGTATTAGTTTATGTTCTGAAATTGT 188558 | | |||||||| ||| | | ||| | |||||| | ||||||| ||| ||| | Sbjct 9772 AATCGCAGGTCCCGGTGTCTTCGTGTGTAACGAATGTGTAGATTTATGTAATGATATTAT 9713 Query 188559 T---GAAGAGGAATTAGAGACAACTGAAGAATTCTCAATGGAAGATGTTCCACTTCCAAA 188615 | ||||| | | | | ||| || | ||| | || | ||||| ||| Sbjct 9712 TCGTGAAGAAGCAATTGCTCATGCTGTTGAGGT-TCA--GAAAAAATTTCCAACACCATC 9656 Query 188616 TGAAATTGTTGAATTATTAGATAATCATATTATTGGACAAGAAAAAGCAAAACGTCAATT 188675 |||||| | |||||||| || | || || |||| ||| | || || ||| Sbjct 9655 AGAAATTCATCAATTATTAAATGAATATGTTGTTGGTCAAAATCTTGCTAAGAAAATATT 9596 Query 188676 AGCTGTATCAGTTTATAATCATTATAAGCGCATTAATGCTCTTAATGaaaaatcaaaaaa 188735 |||||| | || || ||||||||||| || ||||| ||| | ||||| | | Sbjct 9595 AGCTGTTGCCGTGTACAATCATTATAAACG-ATTAAGTTTCTACACTAAAAA-----AGA 9542 Query 188736 tgatgatggagtaaagatcaaaaaaTCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGG 188795 |||| || | || ||||| |||| | ||||| |||| || |||||||| || Sbjct 9541 TGATTCTGTTGAAATTGGCAAAAG---TAATATCCTTTTGATTGGTCCCACTGGTTCCGG 9485 Query 188796 TAAAACATTATTTGCTCAAACATTGGCTGATATGTTACATGTACCTCTAGCTATCTCTGA 188855 ||||| ||||| || |||||||| ||| | || ||| |||| ||| | ||||| | || Sbjct 9484 AAAAACTTTATTAGCCCAAACATTAGCTAAAATATTAAATGTTCCTTTTGCTATTGCAGA 9425 Query 188856 TGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTTCG 188915 ||||||| | || |||||||| || ||||||||||| || || ||||| ||||| ||| Sbjct 9424 TGCAACTACATTGACAGAAGCGGGATATGTAGGTGAGGACGTTGAAAA--TATTG-TTCA 9368 Query 188916 TT---TAATCCAAGCAGCTGATTACGATATCGAATTAGCGGAACGTGGAATTGTATATAT 188972 || | ||| | | |||| ||| | ||| ||| || || ||| | ||||| Sbjct 9367 AAAACTATTACAAAAATGTAATTATGATGTTGAAAAAGCAAAAACAGGCATTATTTATAT 9308 Query 188973 CGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACATCCATTACCCGAGATGTATC 189032 || ||| | |||||||| ||| | ||| |||| || | || | || || ||||| || Sbjct 9307 TGACGAAATTGATAAAATCGCTCGTAAAACAGATAGTCCCTCATTAACTCGCGATGTTTC 9248 Query 189033 TGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCC 189092 ||| |||||||| |||||||||||||| ||| | || ||||||||| |||| |||| Sbjct 9247 TGGTGAAGGAGTGCAGCAAGCTTTATTGAAATTAATCGAAGGTACAATTGCTTCTATTCC 9188 Query 189093 TCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTTG-AAATAGATACAACTAATA 189151 ||||| |||||||| ||||| || || |||| ||| ||| | ||||||| |||||| Sbjct 9187 CCCTCAGGGTGGTCGAAAACATCCGCAGCAAG-AATATTTGCGAGTAGATACCTCTAATA 9129 Query 189152 TCTTGTTTATTCTTGGTGGAGCGTTTGATGGTCTTGAAAACATTATCAAGAGACGCGCTA 189211 | || |||||| ||| ||||| |||| || | | | || ||||| || | || || Sbjct 9128 TTTTATTTATTTGTGGAGGAGCATTTGCTGATTTGCATAAAATTATTCAGCGTCG---TA 9072 Query 189212 CAAAATCAACTTTAGGTTTTGATGATAGTGTAGATAAAGTA------CAAGAAGA--AAT 189263 || | | | || ||| | || || | ||||| ||||| || Sbjct 9071 CAGA---TAATAGTGGGATTGGTTTTACTGCGG---AAGTACGTTCGCAAGACGATTGTA 9018 Query 189264 CAAGGA--TGACAATAAAGTATTCCAACATCTTCAACCGCAAGATATTGTTAAGTATGGT 189321 ||| | | | ||| || || | |||| ||||| ||||| | |||| | |||| Sbjct 9017 CAAACACTTCAGAATTAATTAAACAAACA----GAACCGGAAGATTTAATTAAATTTGGT 8962 Query 189322 TTAATTCCAGAATTTATTGGGCGTGTACCAGTAATCGCAACTCTTAACAAACTTG-ATCG 189380 ||||||||||||||| |||| || |||| || ||||| ||| ||| | | ||| || Sbjct 8961 TTAATTCCAGAATTTGTTGGACGGCTACCTGTTATCGCCACT-TTAGAAGAATTGAATGA 8903 Query 189381 AGATGCATTGATTAACATTTTAACTGAGCCGCAAAACGCTATCATTAAACAATATCAGAA 189440 |||||| || ||| ||||||||| || || |||| || | ||| || ||||| || Sbjct 8902 AGATGCTTTAATTCGCATTTTAACAGAACCAAAAAATGCGTTGGCTAAGCAGTATCATAA 8843 Query 189441 ATTGTTAGATATGGATGGCGTGGAATTAGAATTCCAAAAAGAAGCATTAGAATCAATTGC 189500 ||||| || | || | ||| || | || || | |||| || || |||||| Sbjct 8842 GTTGTTTGAATTAGAGAGTGTGCAAATTGATTTTCGTGAAGATGCTTTGCGGCAAATTGC 8783 Query 189501 AGATGAAGCGATTGAACGTAATACTGGTGCTCGCGGATTACAATCCATTATTGAAAATAT 189560 | ||| ||| | | || || || || || ||||||| |||||| | ||| ||| Sbjct 8782 TAAGAGAGCCATTCAGAGAAAAACAGGGGCACGTGGATTACGCTCCATTGTCGAACATAC 8723 Query 189561 TATGTTAGATGTAATGTATGAAGTTCC 189587 | | | ||| ||||||| || |||| Sbjct 8722 TCTACTGGATTTAATGTACGAGCTTCC 8696 >seq118729 Length=1571 Score = 127 bits (140), Expect = 6e-24 Identities = 322/479 (67%), Gaps = 23/479 (5%) Strand=Plus/Minus Query 188439 AAAGTCTAAAGAATTAAAATGTTCATTCTGTGGGAAGCCGCAAG-AGCACGTTCGTAAAT 188497 ||| || ||| ||| | ||||| || ||||| || | || | || |||||||||| Sbjct 525 AAAATCACAAGTTTTATATTGTTCGTTTTGTGGCAAAAAGTCAGCATCAAGTTCGTAAAT 466 Query 188498 TAGTTGCAGGTCCAAATGTTCACATTTGTGATGAATGTATTAGTTTATGTTCTGAAATTG 188557 || | |||||||| ||| | | ||| | |||||| | ||||||| ||| ||| Sbjct 465 TAATCGCAGGTCCCGGTGTCTTCGTGTGTAACGAATGTGTAGATTTATGTAATGATATTA 406 Query 188558 TT---GAAGAGGAATTAGAGACAACTGAAGAATTCTCAATGGAAGATGTTCCACTTCCAA 188614 || ||||| | | | | ||| || | ||| | || | ||||| ||| Sbjct 405 TTCGTGAAGAAGCAATTGCTCATGCTGTTGAGGT-TCA--GAAAAAATTTCCAACACCAT 349 Query 188615 ATGAAATTGTTGAATTATTAGATAATCATATTATTGGACAAGAAAAAGCAAAACGTCAAT 188674 |||||| | |||||||| || | || || |||| ||| | || || || Sbjct 348 CAGAAATTCATCAATTATTAAATGAATATGTTGTTGGTCAAAATCTTGCTAAGAAAATAT 289 Query 188675 TAGCTGTATCAGTTTATAATCATTATAAGCGCATTAATGCTCTTAATGaaaaatcaaaaa 188734 ||||||| | || || ||||||||||| || ||||| ||| | | | |||| Sbjct 288 TAGCTGTTGCCGTGTACAATCATTATAAACG-ATTAAGTTTCT------ACACTAAAAAG 236 Query 188735 atgatgatggagtaaagatcaaaaaaTCTAATGTTCTTTTAG-TTGG-CCCTACTGGTTC 188792 ||||| || | || |||| |||| | ||||| | |||| ||| |||||||| Sbjct 235 ATGATTCTGTTGAAATTGGCAAAG----TAATATCCTTTTTGATTGGTCCCAACTGGTTC 180 Query 188793 AGGTAAAACATTATTTGCTCAAACATTGGCTGATATGTTACA-TGTACCTCTAGCTATCT 188851 || ||||| ||||| || |||||||| ||| | || ||| | ||| ||| | ||||| Sbjct 179 CGGAAAAACTTTATTAGCCCAAACATTAGCTAAAATATTAAAATGTTCCTTTTGCTATTG 120 Query 188852 CTGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAACGTATTG 188910 | ||||||||| | || |||||||| || ||||||||||| || || ||||| ||||| Sbjct 119 CAGATGCAACTACATTGACAGAAGCGGGATATGTAGGTGAGGACGTTGAAAA--TATTG 63 >seq195024 Length=163274 Score = 123 bits (136), Expect = 8e-23 Identities = 280/417 (67%), Gaps = 8/417 (2%) Strand=Plus/Minus Query 188779 GGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGCTGATATGTTACATGTA 188838 |||||||| ||||| || ||||| | | || |||||| |||| ||| | |||| Sbjct 113773 GGCCCTACGGGTTCGGGCAAAACGCTGCTGGCCCAAACACTGGCCCGCATGCTGGATGTG 113714 Query 188839 CCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATGTG 188898 ||| | | || |||| || || | | || ||||| ||||| || ||||| || || Sbjct 113713 CCTTTTGTGATGGCTGACGCCACCACACTGACCGAAGCCGGTTACGTGGGTGAGGACGTC 113654 Query 188899 GAAAACGTATTGCTTCGTTTAATCC----AAGCAGCTGATTACGATATCGAATTAGCGGA 188954 || ||| || | ||| | | | || | || ||||||||| | ||| |||| | Sbjct 113653 GAGAAC--ATCG-TTCAAAAACTGCTGCAAAACTGC-GATTACGATGTGGAAAAAGCGCA 113598 Query 188955 ACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACATC 189014 || | ||| | || ||||| ||| | || |||||| | | || || || | | | || Sbjct 113597 GCGCGCCATTATCTACATCGACGAAATCGACAAAATTTCCCGCAAGTCGGATAACCCTTC 113538 Query 189015 CATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAGG 189074 || ||||| ||||| || ||||| || || || || || | | || | || ||||| Sbjct 113537 GATCACCCGCGATGTGTCGGGCGAGGGCGTGCAACAGGCACTGCTCAAGCTGATCGAAGG 113478 Query 189075 TACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTTGA 189134 |||||| || || ||||| |||||||| || || ||||| |||| || | | | Sbjct 113477 TACAGTCGCTTCGGTGCCTCCGCAAGGTGGCCGCAAGCACCCCAACCAGGACTTTGTGCA 113418 Query 189135 AATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTTTGATGGTCTTGAAAA 189191 | ||||| || | || |||| ||| | ||||| || |||||||| || || || Sbjct 113417 GGTGGATACCACCAGCATTCTGTTCATTGTGGGTGGTGCTTTTGATGGCCTGGAGAA 113361 >seq122304 Length=34685 Score = 93.3 bits (102), Expect = 1e-13 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 403941 GCGCCTGTAGCTCAGCTGGATAGAGCACGAGCCTTCTAAGCCCGCGGTCGTAGGTTCGAA 404000 ||||| ||||||||| |||||||||||||||||||||||| | ||||| ||||||||| Sbjct 3125 GCGCCCGTAGCTCAGTCGGATAGAGCACGAGCCTTCTAAGCTTGGGGTCGCAGGTTCGAA 3066 Query 404001 TCCTACCAGGCGCG 404014 |||| || |||||| Sbjct 3065 TCCTGCCGGGCGCG 3052 >seq121303 Length=33816 Score = 93.3 bits (102), Expect = 1e-13 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 403941 GCGCCTGTAGCTCAGCTGGATAGAGCACGAGCCTTCTAAGCCCGCGGTCGTAGGTTCGAA 404000 ||||| ||||||||| |||||||||||||||||||||||| | ||||| ||||||||| Sbjct 2256 GCGCCCGTAGCTCAGTCGGATAGAGCACGAGCCTTCTAAGCTTGGGGTCGCAGGTTCGAA 2197 Query 404001 TCCTACCAGGCGCG 404014 |||| || |||||| Sbjct 2196 TCCTGCCGGGCGCG 2183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587931398066432