Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_023738.1 Length=106327 Score E Sequences producing significant alignments: (Bits) Value seq122309 82.4 5e-11 seq121308 82.4 5e-11 >seq122309 Length=32212 Score = 82.4 bits (90), Expect = 5e-11 Identities = 171/254 (67%), Gaps = 3/254 (1%) Strand=Plus/Plus Query 94435 TCGGAGACGAACGCGCCCTGTATCCGGATGGCGCTGCGCGCCCCCACCGGCAGGAATAAC 94494 || || ||||||| ||| || | |||| || ||| | || | |||| | | | | Sbjct 18245 TCCGAAACGAACGGGCCGTGGACGCGGA---CGATGCCCTTGCCGCCGGGCATGTAGAGC 18301 Query 94495 CCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTATCG 94554 ||||||| | |||| | ||||| || || |||| ||||||| || |||| Sbjct 18302 ATGTCACCCTTGCCCAATAATTGCTCCGCGCCCTGCTCGCCCAGGATGGTGCGCGAATCG 18361 Query 94555 GTGAGGGACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGTC 94614 | |||| | ||| || | |||| |||| || |||||| | ||| || Sbjct 18362 ATCTTCGACGTGACGTGGAAGGAGATGCGCGTCGGCAGATTCGCCTTGATCACGCCGGTA 18421 Query 94615 ACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCC 94674 | || || ||||| || ||||||||||||| || ||| || |||||||| || |||||| Sbjct 18422 ATGACGTCGACGGACGGGCGCTGCGTCGCCATGATGAGGTGGATGCCGGCGGCGCGCGCC 18481 Query 94675 TTCTGCGCGATGCG 94688 || ||||||| ||| Sbjct 18482 TTTTGCGCGAGGCG 18495 >seq121308 Length=30306 Score = 82.4 bits (90), Expect = 5e-11 Identities = 171/254 (67%), Gaps = 3/254 (1%) Strand=Plus/Minus Query 94435 TCGGAGACGAACGCGCCCTGTATCCGGATGGCGCTGCGCGCCCCCACCGGCAGGAATAAC 94494 || || ||||||| ||| || | |||| || ||| | || | |||| | | | | Sbjct 1520 TCCGAAACGAACGGGCCGTGGACGCGGA---CGATGCCCTTGCCGCCGGGCATGTAGAGC 1464 Query 94495 CCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTATCG 94554 ||||||| | |||| | ||||| || || |||| ||||||| || |||| Sbjct 1463 ATGTCACCCTTGCCCAATAATTGCTCCGCGCCCTGCTCGCCCAGGATGGTGCGCGAATCG 1404 Query 94555 GTGAGGGACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGTC 94614 | |||| | ||| || | |||| |||| || |||||| | ||| || Sbjct 1403 ATCTTCGACGTGACGTGGAAGGAGATGCGCGTCGGCAGATTCGCCTTGATCACGCCGGTA 1344 Query 94615 ACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCC 94674 | || || ||||| || ||||||||||||| || ||| || |||||||| || |||||| Sbjct 1343 ATGACGTCGACGGACGGGCGCTGCGTCGCCATGATGAGGTGGATGCCGGCGGCGCGCGCC 1284 Query 94675 TTCTGCGCGATGCG 94688 || ||||||| ||| Sbjct 1283 TTTTGCGCGAGGCG 1270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339312931560512