Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq48326 147 2e-30 seq9079 145 7e-30 seq70405 104 2e-17 seq188574 89.7 5e-13 >seq48326 Length=57257 Score = 147 bits (162), Expect = 2e-30 Identities = 158/207 (76%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGC 133514 ||| | ||||||||| ||||| || ||||| || || ||| || ||| |||||| Sbjct 53301 ATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAG--ATAGTGTGCGGCCGTCTTCGAGC 53244 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | ||||| |||||||| || ||||| |||||||||||||| |||| Sbjct 53243 TGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATC 53184 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||| ||||| | |||| ||||| ||||||| || |||| |||| |||||| ||| Sbjct 53183 TTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACTTCGAGCGTGATGGTTTTACCG 53124 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 || || || || || |||||||||||| Sbjct 53123 GTGAGTGTCTTGACAAAAATCTGCATG 53097 Score = 129 bits (142), Expect = 6e-25 Identities = 157/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | ||||||||||||||| || ||||| || | | ||| || |||||||| Sbjct 53075 AAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTC--CGAAAGTGTGCGGCCGTCCTCGA 53018 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||||||||| || | ||||| ||||||||||| || || || || |||||||| || Sbjct 53017 GCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGGA 52958 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||||| || | | ||| | ||||||| |||| || || || | |||| || |||| Sbjct 52957 TCTTTGCTTTTACGTTCTCGATCGTGTCGCTGGGTTCAACTTCCAGCGTGATTGTCTTGC 52898 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 | |||| ||| || || || ||||||||| || Sbjct 52897 CAGTCAAAGTCTTGACAAAGATCTGCATGCCT 52866 Score = 127 bits (140), Expect = 2e-24 Identities = 147/193 (76%), Gaps = 5/193 (3%) Strand=Plus/Minus Query 133470 TCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTAA 133529 |||||||| || |||||||| || ||| ||| |||||| ||||||||||| ||| | Sbjct 52832 TCTTTCTGAATGTTGTAATCAGACAGCGT--ACG-GTCCTCAAGCTGCTTGCCGGCGAAG 52776 Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-TTGAGCTG 133588 || || ||||||||||| ||||| || ||||||||||| ||| ||| || |||| | Sbjct 52775 ATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCC-TGAATTTTCGCCTTGACATT 52717 Query 133589 CTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTAC 133648 |||| ||||| | ||||| || |||| |||| ||||| || || || || || || Sbjct 52716 TTCAATAGTGTCACTAGGCTCAACTTCGAGCGTGATAGTTTTTCCCGTGAGTGTCTTCAC 52657 Query 133649 GAAAATCTGCATG 133661 |||||||||||| Sbjct 52656 AAAAATCTGCATG 52644 Score = 109 bits (120), Expect = 5e-19 Identities = 146/201 (73%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 ||| ||||| || || || ||||| || || || ||| ||| || ||||| ||| Sbjct 53523 GGTCGACTCCTTTTGAATGTTGTAGTCAGACAGGGT--ACGGCCGTCTTCTAGCTGTTTG 53466 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 ||||| | || || |||||||| || || || || ||||||||||| ||| || | Sbjct 53465 CCCGCAAAGATAAGACGCTGCTGATCAGGTGGAATCCCTTCCTTGTCCTGGATTTTCGCC 53406 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | ||||| |||||| | ||||| || || | ||||| || ||||| |||||| Sbjct 53405 TTCACGTTCTCAATCGTGTCACTCGGCTCGACCTCCAGGGTGATCGTCTTGCCCGTCAGA 53346 Query 133641 GTTTTTACGAAAATCTGCATG 133661 || || |||||||| |||||| Sbjct 53345 GTCTTCACGAAAATTTGCATG 53325 >seq9079 Length=83715 Score = 145 bits (160), Expect = 7e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || |||| ||||||||||||||| || ||||| || | ||| |||||||||| Sbjct 2901 AAGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGTGTGCGGCCGTCCTCGAGC 2960 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | ||||| ||||||||||| || ||||| || |||||||| |||| Sbjct 2961 TGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGGATC 3020 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||| |||| | ||| | |||||| |||| || || || | |||| |||||||| Sbjct 3021 TTTGCTTTGACGTTCTCGATCGTGTCACTGGGTTCAACTTCTAGCGTGATCGTTTTGCCA 3080 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 |||| ||| || ||||| ||||||||| || Sbjct 3081 GTCAAAGTCTTGACGAAGATCTGCATGCCT 3110 Score = 123 bits (136), Expect = 2e-23 Identities = 147/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 133470 TCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGCCCGCGT 133527 |||||||| || |||||||| || ||| ||| |||||| ||||||||||| ||| Sbjct 3372 TCTTTCTGAATGTTGTAATCAGACAGCGT--ACGGCCGTCCTCAAGCTGCTTGCCGGCGA 3429 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CTTGAGC 133586 | || || ||||||||||| ||||| || ||||||||||| ||| ||| | ||||| Sbjct 3430 AGATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTC-CTGAATTTTCGCCTTGACA 3488 Query 133587 TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTT 133646 | |||| ||||| | ||||| || |||| |||| ||||| || || || || || Sbjct 3489 TTTTCAATGGTGTCACTCGGCTCAACTTCGAGCGTGATAGTTTTTCCCGTGAGTGTCTTC 3548 Query 133647 ACGAAAATCTGCATG 133661 || |||||||||||| Sbjct 3549 ACAAAAATCTGCATG 3563 Score = 122 bits (134), Expect = 8e-23 Identities = 150/203 (74%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 |||||||||||||| || ||||| || | ||| ||| |||||||||||| |||| Sbjct 3138 GTGGACTCTTTCTGAATGTTGTAGTCTGAGA--GTGTACGGCCGTCCTCGAGCTGTTTGC 3195 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||| ||||||||||| || || || || |||||||| ||||||| | Sbjct 3196 CAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGGATCTTTGCTT 3255 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||||| |||| || || || | |||| || ||||| |||| || Sbjct 3256 TTACGTTCTCGATCGTGTCGCTGGGTTCAACTTCCAGCGTGATCGTCTTGCCAGTCAAAG 3315 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 | || || || ||||||||| || Sbjct 3316 TCTTGACAAAGATCTGCATGCCT 3338 Score = 111 bits (122), Expect = 2e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| || || || ||||| || || ||| ||| || ||||| ||||| Sbjct 2681 GGTCGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGGCCGTCTTCTAGCTGTTTGCC 2740 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || || ||||| || || ||||| ||||||||||| ||| ||| ||| Sbjct 2741 CGCAAAGATAAGACGTTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGGATTTTTGCCTT 2800 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||| | ||||| || |||| |||| |||||| ||||| || || Sbjct 2801 GACATTTTCAATGGTGTCACTAGGCTCGACTTCGAGCGTGATGGTTTTACCGGTGAGTGT 2860 Query 133643 TTTTACGAAAATCTGCATG 133661 || || |||||||||||| Sbjct 2861 CTTGACAAAAATCTGCATG 2879 >seq70405 Length=8866 Score = 104 bits (114), Expect = 2e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 148850 CTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCC 148909 ||| ||||| | ||||||| |||| ||||| |||||| |||||||| ||||| ||| Sbjct 3232 CTCGTCCGGAGATGTGTACTCCACGACCTCGGTGCACAGGTTGCTGCACTTGATGGTGCC 3173 Query 148910 CACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCC 148969 | ||| || ||||| ||||| ||||| || ||||||||||||||||| ||| ||| Sbjct 3172 AAGGTTTTTCTGATTAGACTTGCGATTGCAGGCATCCTTGTACAGCATGTATGGTGTGCC 3113 Query 148970 AGTTTCCACCTG 148981 ||||| | ||| Sbjct 3112 CGTTTCAATCTG 3101 >seq188574 Length=9004 Score = 89.7 bits (98), Expect = 5e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 148850 CTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCC 148909 ||| ||||| | ||||||| | | ||||| |||||| |||||||| ||||| ||| Sbjct 8557 CTCGTCCGGAGATGTGTACTCCGCCACCTCGGTGCACAGGTTGCTGCACTTGATGGTGCC 8616 Query 148910 CACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCC 148969 | ||| || ||||| ||||| ||||| || ||||||||||||||||| ||| ||| Sbjct 8617 AAGGTTTTTCTGATTAGACTTGCGATTGCAGGCATCCTTGTACAGCATGTATGGTGTGCC 8676 Query 148970 AGTTTCCACCTG 148981 || || | ||| Sbjct 8677 CGTCTCAATCTG 8688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482241954208160