Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq9079 122 6e-23 seq48326 113 3e-20 seq74841 84.2 1e-11 seq4323 84.2 1e-11 >seq9079 Length=83715 Score = 122 bits (134), Expect = 6e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| ||||| ||| |||||| || |||||||| || ||||||||||| |||| || Sbjct 2897 CACCAAGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGTGTGCGGCCGTCCTC 2956 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || |||||||| || | ||||||||| || | || | ||| || ||||| Sbjct 2957 GAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTG 3016 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || || || || | || | ||||| || | ||| || || | ||||||||||| Sbjct 3017 GATCTT-TGCTTTGACGTTCTCGATCGTGTCACTGGGTTCAACTTCTAGCGTGATCGTTT 3075 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || || || || ||||||||||| Sbjct 3076 TGCCAGTCAAAGTCTTGACGAAGATCTGCAT 3106 Score = 116 bits (128), Expect = 2e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 |||| ||| | || |||||| |||||| || |||||||| || |||||||| || || Sbjct 3120 CGTAGCACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGTGTACGGCCG 3179 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || || | ||||| || ||||| || | ||||||||| ||| | || | || || ||| Sbjct 3180 TCCTCGAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATTCCCTCCTTG 3239 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || || || || || || | || | |||||||| | ||| || || | |||||| Sbjct 3240 TCTTGGATCTT-TGCTTTTACGTTCTCGATCGTGTCGCTGGGTTCAACTTCCAGCGTGAT 3298 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || || || || || || |||||||||||||| Sbjct 3299 CGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 3334 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 |||| ||| | || || || || ||||| || ||||||||||| || || || || || Sbjct 3348 CGTAGCACAAGGTGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGACAGCGTACGGCCG 3407 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || || | || || ||||| || |||| ||||||||| || | || | ||||| ||| Sbjct 3408 TCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTG 3467 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || ||||||| | | |||| || | |||||| || | || || || | |||||| Sbjct 3468 TCCTGAATTTTC-GCCTTGACATTTTCAATGGTGTCACTCGGCTCAACTTCGAGCGTGAT 3526 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| || || | || || ||||| |||||||| Sbjct 3527 AGTTTTTCCCGTGAGTGTCTTCACAAAAATCTGCAT 3562 >seq48326 Length=57257 Score = 113 bits (124), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || || ||| |||||| || |||||||| || || |||||||| |||| || Sbjct 53079 CACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGTGTGCGGCCGTCCTC 53020 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || |||||||| || | ||||||||| ||| | || | || || ||||| Sbjct 53019 GAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTG 52960 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || || || || | || | |||||||| | ||| || || | |||||| || | Sbjct 52959 GATCTT-TGCTTTTACGTTCTCGATCGTGTCGCTGGGTTCAACTTCCAGCGTGATTGTCT 52901 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || || || |||||||||||||| Sbjct 52900 TGCCAGTCAAAGTCTTGACAAAGATCTGCAT 52870 Score = 102 bits (112), Expect = 5e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| || ||| ||| || || |||||||| || || |||||||| |||| || | || Sbjct 53301 ATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGATAGTGTGCGGCCGTCTTCGAGCTG 53242 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 |||||||| || || | |||||||||||| | || | ||||| ||||| || || Sbjct 53241 CTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTT 53182 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 || | |||| || | |||||| || | || || || | |||||| |||||||| | Sbjct 53181 -TGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACTTCGAGCGTGATGGTTTTACCGG 53123 Query 33725 TTAACGTTTTTACAAAGATCTGCAT 33749 | | || || ||||| |||||||| Sbjct 53122 TGAGTGTCTTGACAAAAATCTGCAT 53098 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/216 (70%), Gaps = 5/216 (2%) Strand=Plus/Minus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 |||| ||| | || || || || ||||| || ||||||||||| || || || || | Sbjct 52856 CGTAGCACAAGGTGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGACAGCGTACG---G 52800 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || || | || || ||||| || |||| ||||||||| || | || | ||||| ||| Sbjct 52799 TCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTG 52740 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || ||||||| | | |||| || | ||||| || | || || || | |||||| Sbjct 52739 TCCTGAATTTTC-GCCTTGACATTTTCAATAGTGTCACTAGGCTCAACTTCGAGCGTGAT 52681 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| || || | || || ||||| |||||||| Sbjct 52680 AGTTTTTCCCGTGAGTGTCTTCACAAAAATCTGCAT 52645 >seq74841 Length=4471 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || ||||||||||||||||| ||||| |||| ||||| || || || ||||| Sbjct 3179 TCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAG 3120 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || | |||||| || ||| | || | || || ||||| ||||| |||| | Sbjct 3119 ATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTT 3060 Query 33679 GTCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 | | ||||||||| | || || || | || || || || || || | || || || Sbjct 3059 TTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTAACG 3000 Query 33739 AAGATCTGCAT 33749 ||||| ||||| Sbjct 2999 AAGATTTGCAT 2989 >seq4323 Length=113087 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || ||||||||||||||||| ||||| |||| ||||| || || || ||||| Sbjct 36932 TCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAG 36991 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || | |||||| || ||| | || | || || ||||| ||||| |||| | Sbjct 36992 ATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTT 37051 Query 33679 GTCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 | | ||||||||| | || || || | || || || || || || | || || || Sbjct 37052 TTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTAACG 37111 Query 33739 AAGATCTGCAT 33749 ||||| ||||| Sbjct 37112 AAGATTTGCAT 37122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327922477889280