Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq9079 96.9 8e-15 seq48326 93.3 1e-13 >seq9079 Length=83715 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| |||||||| ||||| | ||||| || |||| Sbjct 3559 CAGATTTTTGTGAAGACACTCACGGGAAAAACTATCACGCTCGAAGTTGAGCCGAGTGAC 3500 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| || ||||| || || ||||||||| || ||| || Sbjct 3499 ACCATTGAAAATGTCAAGGCGAAAATTCAGGACAAGGAAGGAATTCCTCCTGACCAGCAG 3440 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| | || || || | || || | ||||||||| | Sbjct 3439 CGTCTGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGTACGCTGTCTGATTACAACATT 3380 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||||| ||| ||||||||||| Sbjct 3379 CAGAAAGAAAGTACCCTTCACCTTGT 3354 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || || || |||||||| ||||||| ||| ||| Sbjct 3331 CAGATCTTTGTCAAGACTTTGACTGGCAAGACGATCACGCTGGAAGTTGAACCCAGCGAC 3272 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| ||||| |||||| ||||| || || |||||| || ||| || Sbjct 3271 ACGATCGAGAACGTAAAAGCAAAGATCCAAGACAAGGAGGGAATTCCACCAGACCAGCAG 3212 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || || ||| | || || || | || | | || |||||| | Sbjct 3211 CGTCTCATCTTTGCTGGCAAACAGCTCGAGGACGGCCGTACACTCTCAGACTACAACATT 3152 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| |||||||||||||| Sbjct 3151 CAGAAAGAGTCCACTCTTCACCTTGT 3126 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || ||||| ||||| | ||||| || | |||| Sbjct 2875 CAGATTTTTGTCAAGACACTCACCGGTAAAACCATCACGCTCGAAGTCGAGCCTAGTGAC 2816 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||| || || || || ||||| || || || ||| Sbjct 2815 ACCATTGAAAATGTCAAGGCAAAAATCCAGGACAAGGAAGGGATCCCACCTGATCAGCAA 2756 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||| || || || ||| | ||||| || | || || | || |||||| | Sbjct 2755 CGTCTTATCTTTGCGGGCAAACAGCTAGAAGACGGCCGCACCCTGTCTGACTACAACATT 2696 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 || || ||||| || ||||||||||| Sbjct 2695 CAAAAGGAGTCGACCCTTCACCTTGT 2670 >seq48326 Length=57257 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || ||||| ||||| | ||||| || |||| Sbjct 53101 CAGATTTTTGTCAAGACACTCACCGGTAAAACCATCACGCTCGAAGTCGAGCCCAGTGAC 53160 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| |||||| || || || ||||| ||| ||||| || Sbjct 53161 ACCATTGAAAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAGCAG 53220 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||||||||||||| | ||||| || | || | | || |||||| | Sbjct 53221 CGTCTCATCTTCGCCGGAAAGCAGCTCGAAGACGGCCGCACACTATCTGACTACAACATT 53280 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || ||||| || || Sbjct 53281 CAGAAGGAGTCCACCCTTCATCTCGT 53306 Score = 91.5 bits (100), Expect = 3e-13 Identities = 144/206 (70%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| |||||||| ||||| | ||||| || | |||| Sbjct 52648 CAGATTTTTGTGAAGACACTCACGGGAAAAACTATCACGCTCGAAGTTGAGCCTAGTGAC 52707 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| || ||||| || || ||||||||| || ||| || Sbjct 52708 ACTATTGAAAATGTCAAGGCGAAAATTCAGGACAAGGAAGGAATTCCTCCTGACCAGCAG 52767 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| | || || | || || | ||||||||| | Sbjct 52768 CGTCTGATCTTCGCCGGCAAGCAGCTTGAGGA---CCGTACGCTGTCTGATTACAACATT 52824 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||||| ||| ||||||||||| Sbjct 52825 CAGAAAGAAAGTACCCTTCACCTTGT 52850 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || || || || ||||| ||||||| ||| ||| Sbjct 52873 CAGATCTTTGTCAAGACTTTGACTGGCAAGACAATCACGCTGGAAGTTGAACCCAGCGAC 52932 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| ||||| |||||| ||||| || || |||||| || ||| || Sbjct 52933 ACGATCGAGAACGTAAAAGCAAAGATCCAAGACAAGGAGGGAATTCCACCAGACCAGCAG 52992 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| ||||| |||||| | || || || | || | | || |||||| || Sbjct 52993 CGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACACTTTCGGACTACAACATC 53052 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| || || ||| | || || ||||||| Sbjct 53053 CAGAAAGAGTCCACCCTCCACTTGGTGCTGCGACTTCG 53090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178866822660364