Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_025430.1 Length=42351 Score E Sequences producing significant alignments: (Bits) Value seq122298 80.6 7e-11 seq121302 80.6 7e-11 >seq122298 Length=39529 Score = 80.6 bits (88), Expect = 7e-11 Identities = 136/193 (70%), Gaps = 7/193 (4%) Strand=Plus/Minus Query 248 TAGCGATCAACGCCAGCCTGGTCCTGCCACTTGCGCGTTTGCAGCGCGCCTTCAATGAAC 307 || ||||| |||| ||| |||||||||||| || ||||||||||||||||||| | Sbjct 37486 TAACGATCCTTGCCATCCTTGTCCTGCCACTTTCGGGTTTGCAGCGCGCCTTCAAGATAG 37427 Query 308 ACCTTGCTGCCTTTGCGCAGGTACTGGCTGGCGATTTCTGCCAG-CTTTCCG--AAGATG 364 ||||| || || ||| || || ||| | | || || | ||||| || || Sbjct 37426 ACCTTCGAACCCTTTTTCAGATATTGCTCGGCCAGCTTGGCGAGCCCTTCCGAAAAAATC 37367 Query 365 ACCACGCGGTGCCATTCCGTTTTTTCTTT--CTTCTCCCCTGTCTGCTTATCCTTCCAGG 422 || |||||||||||||| || ||||| ||| || |||||| ||||| ||| | Sbjct 37366 ACAACGCGGTGCCATTCGGTGCGCTCTTTGCGTTCACCGCTGTCT--TTATCGCGCCATG 37309 Query 423 TTTCAGACGTGGC 435 | | |||||||| Sbjct 37308 TGTTCGACGTGGC 37296 >seq121302 Length=39529 Score = 80.6 bits (88), Expect = 7e-11 Identities = 136/193 (70%), Gaps = 7/193 (4%) Strand=Plus/Plus Query 248 TAGCGATCAACGCCAGCCTGGTCCTGCCACTTGCGCGTTTGCAGCGCGCCTTCAATGAAC 307 || ||||| |||| ||| |||||||||||| || ||||||||||||||||||| | Sbjct 2044 TAACGATCCTTGCCATCCTTGTCCTGCCACTTTCGGGTTTGCAGCGCGCCTTCAAGATAG 2103 Query 308 ACCTTGCTGCCTTTGCGCAGGTACTGGCTGGCGATTTCTGCCAG-CTTTCCG--AAGATG 364 ||||| || || ||| || || ||| | | || || | ||||| || || Sbjct 2104 ACCTTCGAACCCTTTTTCAGATATTGCTCGGCCAGCTTGGCGAGCCCTTCCGAAAAAATC 2163 Query 365 ACCACGCGGTGCCATTCCGTTTTTTCTTT--CTTCTCCCCTGTCTGCTTATCCTTCCAGG 422 || |||||||||||||| || ||||| ||| || |||||| ||||| ||| | Sbjct 2164 ACAACGCGGTGCCATTCGGTGCGCTCTTTGCGTTCACCGCTGTCT--TTATCGCGCCATG 2221 Query 423 TTTCAGACGTGGC 435 | | |||||||| Sbjct 2222 TGTTCGACGTGGC 2234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135087925606904