Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_025447.1 Length=348532 Score E Sequences producing significant alignments: (Bits) Value seq124163 84.2 5e-11 >seq124163 Length=12495 Score = 84.2 bits (92), Expect = 5e-11 Identities = 204/307 (66%), Gaps = 4/307 (1%) Strand=Plus/Minus Query 279281 ATTCTAAGTGCATGGAACGTTGGTGAGCTTGATGATATGACGTTACCACCTTGTCATAGC 279340 ||| ||||||| ||||| || || || | || | ||| | || || || |||||| Sbjct 5096 ATTGTAAGTGCTTGGAATGTAGGGGAATTAAATCAAATGGCCTTGCCGCCATGTCATTTA 5037 Query 279341 TTTGTGCAATTTTGTGTAGTGCAAGGAAAACTAAGCTGTATTCTGCATCAACGCTCCGCT 279400 | | ||||||| |||| | ||| | | ||||| || ||||| || || Sbjct 5036 CTGTTTCAATTTTACATAGTTGATAGAACAATTTCCTGTAAATTGACCCAACGGTCAGCA 4977 Query 279401 GATCTATTTTTAGGAGTTCCATTTAATATCAGTAGTTACTCACTACTAACTCATATGATT 279460 ||| |||||||| || || |||||||| | ||| | || |||| |||||| | Sbjct 4976 GATGCTTTTTTAGGTGTACCTTTTAATATTGCTTCTTATGCTTTATTAACGCATATGGTG 4917 Query 279461 GCACA--AATTACTGGTTTAGATGTTGGTGAATTTATTTGGAATGGTGGTGATTGTCACA 279518 || | ||| || |||| | || || |||||||||||| || || |||||||| | Sbjct 4916 GCTGAGCAATG--TGATTTAAAGGTAGGAGAATTTATTTGGTCGGGAGGCGATTGTCATA 4859 Query 279519 TTTATAAAAACCACGTTGAACAAGTAAAAGAACAACTACAGCGAAAACCTCGTGAATTAC 279578 |||| || || || | || ||||| | || ||| | || ||||||||||||| Sbjct 4858 TTTACAATAATCATTTGGAGCAAGTTCACGAGCAATTGTCACGTTCTCCTCGTGAATTAC 4799 Query 279579 CTGAATT 279585 | |||| Sbjct 4798 CACAATT 4792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1112383814251996