Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq48326 109 5e-19 seq9079 109 5e-19 seq74841 82.4 7e-11 seq4323 82.4 7e-11 >seq48326 Length=57257 Score = 109 bits (120), Expect = 5e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||||||||||||||| || |||||| ||||| |||||||| || | | Sbjct 53519 GACTCCTTTTGAATGTTGTAGTCAGACAGGGTACGGCCGTCTTCTAGCTGTTTGCCCGCA 53460 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| ||||| || || || ||||| || || ||||| |||| Sbjct 53459 AAGATAAGACGCTGCTGATCAGGTGGAATCCCTTCCTTGTCCTGGATTTTCGCCTTCACG 53400 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || ||||||| || || | || | ||| || || |||||||| || Sbjct 53399 TTCTCAATCGTGTCACTCGGCTCGACCTCCAGGGTGATCGTCTTGCCCGTCAGAGTCTTC 53340 Query 132110 ATGAAAATCTGCATG 132124 | |||||| |||||| Sbjct 53339 ACGAAAATTTGCATG 53325 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | ||||| || |||||||||||||| | || || Sbjct 53312 CGCAGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGATAGTGTGCGGCCG 53253 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||||||||| || |||| |||| |||||||| ||||| ||||| |||||||| || Sbjct 53252 TCTTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCTTCCTTG 53193 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || ||| || | | ||| | || || | ||||| ||||||| ||| | Sbjct 53192 TCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACTTCGAGCGTGATG 53133 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 |||||||| || || || || | |||||||||||| Sbjct 53132 GTTTTACCGGTGAGTGTCTTGACAAAAATCTGCATG 53097 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/193 (71%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 131933 TCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAG 131992 ||||| ||||||||||| || || ||||| || || ||||| || |||| || Sbjct 52832 TCTTTCTGAATGTTGTAATCAGACAGCGTACGG---TCCTCAAGCTGCTTGCCGGCGAAG 52776 Query 131993 ATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGT 132052 || |||||||| || || ||||| || ||||| || || |||||| || | | | Sbjct 52775 ATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGAATTTTCGCCTTGACATTT 52716 Query 132053 TCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATG 132112 || | ||| || | ||||| ||||||| ||| | ||||| || || || || || | Sbjct 52715 TCAATAGTGTCACTAGGCTCAACTTCGAGCGTGATAGTTTTTCCCGTGAGTGTCTTCACA 52656 Query 132113 AAAATCTGCATGA 132125 ||||||||||||| Sbjct 52655 AAAATCTGCATGA 52643 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| || | | | |||||||| || ||||||||||| | || || Sbjct 53084 CGCAGCACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGTGTGCGGCCG 53025 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || |||||||| || |||| | |||| |||||||| || ||||| || || || || || Sbjct 53024 TCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGTGGAATTCCCTCCTTG 52965 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || ||| ||| | | || | || ||| | || || ||||| | ||| | Sbjct 52964 TCTTGGATCTTTGCTTTTACGTTCTCGATCGTGTCGCTGGGTTCAACTTCCAGCGTGATT 52905 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || || ||||||| ||| || | || ||||||||| || Sbjct 52904 GTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCATGCCT 52866 >seq9079 Length=83715 Score = 109 bits (120), Expect = 5e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||||||||||||||| || ||| || ||||| |||||||| || | | Sbjct 2685 GACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGGCCGTCTTCTAGCTGTTTGCCCGCA 2744 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||| || ||||| || || || ||||| || || |||||| || | Sbjct 2745 AAGATAAGACGTTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGGATTTTTGCCTTGACA 2804 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | || || | ||||| ||||||| ||| | |||||||| || || || || Sbjct 2805 TTTTCAATGGTGTCACTAGGCTCGACTTCGAGCGTGATGGTTTTACCGGTGAGTGTCTTG 2864 Query 132110 ATGAAAATCTGCATG 132124 | |||||||||||| Sbjct 2865 ACAAAAATCTGCATG 2879 Score = 102 bits (112), Expect = 8e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| |||| | | |||||||| |||||||||||||| | || || Sbjct 2892 CGCAGCACCAAGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGTGTGCGGCCG 2951 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || |||||||| || |||| | |||| |||||||| || || || || || || || || Sbjct 2952 TCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 3011 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || ||| ||| | | || | || || | || || ||||| | ||| | | Sbjct 3012 TCTTGGATCTTTGCTTTGACGTTCTCGATCGTGTCACTGGGTTCAACTTCTAGCGTGATC 3071 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 ||||| ||||||| ||| || | ||| ||||||||| || Sbjct 3072 GTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCATGCCT 3110 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| |||||||||||||| | ||||| || ||||||||||| || | | Sbjct 3141 GACTCTTTCTGAATGTTGTAGTCTGAGAGTGTACGGCCGTCCTCGAGCTGTTTGCCAGCA 3200 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || ||||| || || || || || || || ||| ||| | Sbjct 3201 AAGATGAGACGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGGATCTTTGCTTTTACG 3260 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | || || ||||| | ||| | ||| || ||||||| ||| || Sbjct 3261 TTCTCGATCGTGTCGCTGGGTTCAACTTCCAGCGTGATCGTCTTGCCAGTCAAAGTCTTG 3320 Query 132110 ATGAAAATCTGCATGACT 132127 | || ||||||||| || Sbjct 3321 ACAAAGATCTGCATGCCT 3338 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 131933 TCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAG 131992 ||||| ||||||||||| || || ||||| || || ||||| || |||| || Sbjct 3372 TCTTTCTGAATGTTGTAATCAGACAGCGTACGGCCGTCCTCAAGCTGCTTGCCGGCGAAG 3431 Query 131993 ATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGT 132052 || |||||||| || || ||||| || ||||| || || |||||| || | | | Sbjct 3432 ATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGAATTTTCGCCTTGACATTT 3491 Query 132053 TCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATG 132112 || | || || ||||||| ||||||| ||| | ||||| || || || || || | Sbjct 3492 TCAATGGTGTCACTCGGCTCAACTTCGAGCGTGATAGTTTTTCCCGTGAGTGTCTTCACA 3551 Query 132113 AAAATCTGCATGA 132125 ||||||||||||| Sbjct 3552 AAAATCTGCATGA 3564 >seq74841 Length=4471 Score = 82.4 bits (90), Expect = 7e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||||||||||||||| | ||| || ||||||||||| || |||| Sbjct 2954 GACTCCTTTTGAATGTTGTAGTCCGAGAGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCG 2895 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTT 132039 | || |||||||| || || ||||| ||||||||||| || |||||| Sbjct 2894 AAAATAAGACGCTGCTGGTCCGGAGGAATGCCTTCTTTGTCCTGAATTTT 2845 >seq4323 Length=113087 Score = 82.4 bits (90), Expect = 7e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||||||||||||||| | ||| || ||||||||||| || |||| Sbjct 37157 GACTCCTTTTGAATGTTGTAGTCCGAGAGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCG 37216 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTT 132039 | || |||||||| || || ||||| ||||||||||| || |||||| Sbjct 37217 AAAATAAGACGCTGCTGGTCCGGAGGAATGCCTTCTTTGTCCTGAATTTT 37266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475448959758240