Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq115183 120 4e-22 seq101362 87.8 2e-12 >seq115183 Length=152922 Score = 120 bits (132), Expect = 4e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 146998 TGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCC 147057 || |||| ||||| || |||| | ||||||||| || |||||||| || |||||| Sbjct 137566 TGCGCCATCATGTGAGTCAGCAAGGCGTAGCTGGCGATATTGAAGGGCACGCCCAGGAAA 137625 Query 147058 ATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGG 147117 || || | | |||||| |||||||| || |||| ||||| ||||| ||||||||| Sbjct 137626 ATATCGGCACTGCGCTGGTAGAGCTGGCAAGATAGCTTGCCGTCTGCCACATAAAACTGG 137685 Query 147118 CACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAG 147177 ||||| |||||| || ||||| ||||| | || ||||| |||||||||||| Sbjct 137686 AACAGGGCGTGGCATGGGGGCAGGGCCATCTGGCCCACATCCGCTACGTTCCAGGCCGAA 137745 Query 147178 ACCACCAGCCG 147188 || | ||| || Sbjct 137746 ACAATCAGGCG 137756 >seq101362 Length=9490 Score = 87.8 bits (96), Expect = 2e-12 Identities = 118/162 (73%), Gaps = 8/162 (5%) Strand=Plus/Minus Query 146901 CCTGGCC--AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCC 146958 ||||||| | ||| | ||||| | || ||||||||||| |||| ||| | ||| || Sbjct 1333 CCTGGCCTCACCTGTTTCTTCAGAGCATCGACGTGGTTGAGATAGATGTGTGTGTCACCG 1274 Query 146959 AGGGTGTGCACAAAGTCCC---CCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTG 147015 | ||||||||||| || | || |||| ||| || || | |||| ||||| || Sbjct 1273 AACGTGTGCACAAACTCGCTAGCCCGCTT---GCCAGTAACCTTAGCCATCATGTGCGTC 1217 Query 147016 AGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCC 147057 | ||| | ||||||||||||||||| || || |||| |||| Sbjct 1216 AACAGGGCATAGCTGGCTATGTTGAATGGCACGCCCAAGCCC 1175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582065135337600