Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq48326 125 6e-24 seq9079 125 6e-24 seq176411 105 6e-18 seq74841 102 7e-17 seq4323 102 7e-17 >seq48326 Length=57257 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||||| || | || ||| || |||| || ||||| || |||||||| Sbjct 53517 CTCCTTTTGAATGTTGTAGTCAGACAGGGTACGGCCGTCTTCTAGCTGTTTGCCCGCAAA 53458 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | |||||||| || | |||| | ||||||||| ||| || ||||| | Sbjct 53457 GATAAGACGCTGCTGATCAGGTGGAATCCCTTCCTTGTCCTGGATTTTCGCCTTCACGTT 53398 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| |||| || ||||||| |||||||| || ||||||| ||| ||||| Sbjct 53397 CTCAATCGTGTCACTCGGCTCGACCTCCAGGGTGATCGTCTTGCCCGTCAGAGTCTTCAC 53338 Query 35725 AAATATCTGCAT 35736 || || ||||| Sbjct 53337 GAAAATTTGCAT 53326 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | | || |||||| || | || ||| || || |||||||| || | Sbjct 53096 CCGCCACGAAGTCGCAGCACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAA 53037 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || |||||||| || ||||| || | ||||||||||| | ||| Sbjct 53036 AGTGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGTGGA 52977 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT-GCCACCGTGTCGCTCGATTCCAC 35688 | | ||||||||| |||| ||||||| ||| | | ||||||||| | ||| || Sbjct 52976 ATTCCCTCCTTGTCTTGGATC-TTTGCTTTTACGTTCTCGATCGTGTCGCTGGGTTCAAC 52918 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| |||||| || || || |||||||| || ||||| |||||||| Sbjct 52917 TTCCAGCGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 52870 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| || | | || || |||| || |||||||| || || || Sbjct 53289 CTCCTTCTGAATGTTGTAGTCAGATAGTGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAA 53230 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | |||||||| |||| ||||| || ||||||||| ||||||| ||| | | | Sbjct 53229 GATGAGACGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATT 53170 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | || || || | |||||| |||||||| || | || || || Sbjct 53169 TTCAATGGTGTCACTGGGCTCGACTTCGAGCGTGATGGTTTTACCGGTGAGTGTCTTGAC 53110 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 53109 AAAAATCTGCAT 53098 Score = 114 bits (126), Expect = 1e-20 Identities = 146/198 (74%), Gaps = 5/198 (3%) Strand=Plus/Minus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 ||||| || || |||||||||||||| | || || || ||| || |||||||| || Sbjct 52838 GTACTTTCTTTCTGAATGTTGTAATCAGACAGCGTACG---GTCCTCAAGCTGCTTGCCG 52782 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTT 35658 || || |||| ||||||||||| | ||||| | ||||||||| ||| ||| | ||| Sbjct 52781 GCGAAGATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCC-TGAATTTTCGCCTT 52723 Query 35659 CAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGT 35718 | | || | | ||||| || | || || || | |||||| ||||| ||||| | || Sbjct 52722 GACATTTTCAATAGTGTCACTAGGCTCAACTTCGAGCGTGATAGTTTTTCCCGTGAGTGT 52663 Query 35719 TTTCACAAATATCTGCAT 35736 |||||||| |||||||| Sbjct 52662 CTTCACAAAAATCTGCAT 52645 >seq9079 Length=83715 Score = 125 bits (138), Expect = 6e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 ||||| || || |||||||||||||| | || || || |||| || |||||||| || Sbjct 3366 GTACTTTCTTTCTGAATGTTGTAATCAGACAGCGTACGGCCGTCCTCAAGCTGCTTGCCG 3425 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTT 35658 || || |||| ||||||||||| | ||||| | ||||||||| ||| ||| | ||| Sbjct 3426 GCGAAGATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCC-TGAATTTTCGCCTT 3484 Query 35659 CAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGT 35718 | | || | | ||||| |||| || || || | |||||| ||||| ||||| | || Sbjct 3485 GACATTTTCAATGGTGTCACTCGGCTCAACTTCGAGCGTGATAGTTTTTCCCGTGAGTGT 3544 Query 35719 TTTCACAAATATCTGCAT 35736 |||||||| |||||||| Sbjct 3545 CTTCACAAAAATCTGCAT 3562 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || ||||||||||| || | | || || |||| || ||||| || || ||||| Sbjct 3143 CTCTTTCTGAATGTTGTAGTCTGAGAGTGTACGGCCGTCCTCGAGCTGTTTGCCAGCAAA 3202 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | |||| | ||||||||| |||| ||||||| || Sbjct 3203 GATGAGACGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGGATC-TTTGCTTTTACGT 3261 Query 35665 T-GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | ||||||||| | ||| || |||| ||||||||| || || |||||||| || | Sbjct 3262 TCTCGATCGTGTCGCTGGGTTCAACTTCCAGCGTGATCGTCTTGCCAGTCAAAGTCTTGA 3321 Query 35724 CAAATATCTGCAT 35736 |||| |||||||| Sbjct 3322 CAAAGATCTGCAT 3334 Score = 118 bits (130), Expect = 1e-21 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || |||||| |||| || ||| || ||||||||||| || | | || || |||| Sbjct 2894 CAGCACCAAGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGTGTGCGGCCGTC 2953 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 || |||||||| || ||||| || | ||||||||||| | || | | ||||||||| Sbjct 2954 CTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 3013 Query 35644 CATGATCTTTTGCTTCAGAGTT-GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCG 35702 |||| ||||||| ||| | | |||||| || | ||| || || | |||||||| Sbjct 3014 TTGGATC-TTTGCTTTGACGTTCTCGATCGTGTCACTGGGTTCAACTTCTAGCGTGATCG 3072 Query 35703 TTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || |||||||| || || || |||||||| Sbjct 3073 TTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 3106 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||||| || | || ||| || |||| || ||||| || |||||||| Sbjct 2687 CTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGGCCGTCTTCTAGCTGTTTGCCCGCAAA 2746 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||| || | || | | ||||||||| ||| ||| ||| | | | Sbjct 2747 GATAAGACGTTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGGATTTTTGCCTTGACATT 2806 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | || || || | |||||| |||||||| || | || || || Sbjct 2807 TTCAATGGTGTCACTAGGCTCGACTTCGAGCGTGATGGTTTTACCGGTGAGTGTCTTGAC 2866 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 2867 AAAAATCTGCAT 2878 >seq176411 Length=6678 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| ||||||||||||||||| | || || |||| |||| |||||| || ||||| Sbjct 4835 TCCTTCTGAATGTTGTAATCGGCGAGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAG 4894 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | ||||| ||||| | |||| || |||||||||| ||| || ||||| | || Sbjct 4895 ATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTT 4954 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | |||||||| | || ||||||| || || || || || || | || || || Sbjct 4955 TTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTAACG 5014 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 5015 AAGATTTGCAT 5025 >seq74841 Length=4471 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| |||||||||||||||| | || || |||| |||| |||||| || ||||| Sbjct 3179 TCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAG 3120 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | ||||| ||||| | |||| || |||||||||| ||| || ||||| | || Sbjct 3119 ATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTT 3060 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | |||||||| | || ||||||| || || || || || || | || || || Sbjct 3059 TTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTAACG 3000 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 2999 AAGATTTGCAT 2989 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/117 (77%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||||| || | | ||| || |||| || |||||||| || || || Sbjct 2952 CTCCTTTTGAATGTTGTAGTCCGAGAGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAA 2893 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCA 35660 || | ||||||||||||| ||||| || || |||||| ||| ||| | ||||| Sbjct 2892 AATAAGACGCTGCTGGTCCGGAGGAATGCCTTCTTTGTCC-TGAATTTTGGCCTTCA 2837 >seq4323 Length=113087 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| |||||||||||||||| | || || |||| |||| |||||| || ||||| Sbjct 36932 TCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAG 36991 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | ||||| ||||| | |||| || |||||||||| ||| || ||||| | || Sbjct 36992 ATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTT 37051 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | |||||||| | || ||||||| || || || || || || | || || || Sbjct 37052 TTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTAACG 37111 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 37112 AAGATTTGCAT 37122 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/117 (77%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||||| || | | ||| || |||| || |||||||| || || || Sbjct 37159 CTCCTTTTGAATGTTGTAGTCCGAGAGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAA 37218 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCA 35660 || | ||||||||||||| ||||| || || |||||| ||| ||| | ||||| Sbjct 37219 AATAAGACGCTGCTGGTCCGGAGGAATGCCTTCTTTGTCC-TGAATTTTGGCCTTCA 37274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449694317266720