Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq9079 129 6e-25 seq48326 122 9e-23 seq74841 114 1e-20 seq4323 114 1e-20 seq176411 107 2e-18 >seq9079 Length=83715 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | || || | || ||||| || || || |||||||||||||||||||| Sbjct 2650 TTCCTCCGCGCAGCCGGAGGACAAGGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAG 2709 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| | ||| || ||||||||||| ||||| || | ||| |||||||| || | Sbjct 2710 ACAGGGTGCGGCCGTCTTCTAGCTGTTTGCCCGCAAAGATAAGACGTTGCTGATCAGGTG 2769 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || || || |||||| ||||| || | ||||| | || | Sbjct 2770 GGATCCCTTCCTTGTCCTGGATTTTTGCCTTGACATTTTCAATGGTGTCACTAGGCTCGA 2829 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | ||||| || |||||||||||||| | || || || ||||| ||||| Sbjct 2830 CTTCGAGCGTGATGGTTTTACCGGTGAGTGTCTTGACAAAAATCTGCAT 2878 Score = 123 bits (136), Expect = 3e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 ||||||| ||| | |||||| ||||| || || |||||||||||||| | ||| | Sbjct 2889 AGTCGCAGCACCAAGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGTGTGCGG 2948 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| ||||| ||||| || | ||||||||| || || || || || || Sbjct 2949 CCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAGGTGGGATACCCTCC 3008 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || ||| |||||| || | ||||| | ||| || || || || Sbjct 3009 TTGTCTTGGATCTTTGCTTTGACGTTCTCGATCGTGTCACTGGGTTCAACTTCTAGCGTG 3068 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || || ||||| || ||||| || ||||| Sbjct 3069 ATCGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 3106 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | ||| ||||| || ||||| || || |||||||||||||| Sbjct 3108 CCTCCACGAAGCCGTAGCACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCTGAG 3167 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| |||||||||||||| ||||| || | ||||||||| || || || Sbjct 3168 AGTGTACGGCCGTCCTCGAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGA 3227 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || ||||| || ||| ||| || || | |||||| | ||| || Sbjct 3228 ATTCCCTCCTTGTCTTGGATCTTTGCTTTTACGTTCTCGATCGTGTCGCTGGGTTCAACT 3287 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || || ||||| || || || || ||||| Sbjct 3288 TCCAGCGTGATCGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 3334 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || ||||| || || |||||||| ||||| ||||||||| | ||| | Sbjct 2433 AGCCGCAGGACAAGGTGGAGGGTCGATTCCTTCTGAATATTGTAGTCGGAGAGAGTGCGC 2492 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || | ||| ||||||||||| || | |||||| || || || || ||||| || Sbjct 2493 CCGTCCTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCCGGTGGAATGCCCTCC 2552 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || ||||| || || || | |||||| | || || || || || Sbjct 2553 TTGTCCTGGATTTTAGCCTTCACATTTTCGATGGTGTCGCTAGGCTCAACCTCTAGGGTT 2612 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| || ||||| | || || ||||| || |||||| Sbjct 2613 ATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 2651 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||| | || || | ||| ||||| || || ||| || ||||||||||| || | | Sbjct 3336 CCTCCACGAAGCCGTAGCACAAGGTGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGAC 3395 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | | || | ||| || ||||| ||||| || || |||| ||||||||| || || || Sbjct 3396 AGC-GTACGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGG 3454 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || || |||||||| ||||| || | ||||| || || || Sbjct 3455 AATTCCTTCCTTGTCCTGAATTTTCGCCTTGACATTTTCAATGGTGTCACTCGGCTCAAC 3514 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || ||||| || || | || || || ||||| ||||| Sbjct 3515 TTCGAGCGTGATAGTTTTTCCCGTGAGTGTCTTCACAAAAATCTGCAT 3562 >seq48326 Length=57257 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||| ||||| || || ||||| ||||| |||||||||||||| Sbjct 53324 CCACCGCGGAGCCGCAGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAT 53265 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| |||||||| || || || || || | |||||||||||| || || Sbjct 53264 AGTGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGA 53205 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || ||| ||||| || | ||||| | || || Sbjct 53204 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACT 53145 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || |||||||||||||| | || || || ||||| ||||| Sbjct 53144 TCGAGCGTGATGGTTTTACCGGTGAGTGTCTTGACAAAAATCTGCAT 53098 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | || || | || ||||| || || || |||||||||||||||||||| Sbjct 53554 TTCCTCCGCGCAGCCGGAGGACAAGGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAG 53495 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| | ||| || ||||||||||| ||||| || | |||||||||||| || | Sbjct 53494 ACAGGGTACGGCCGTCTTCTAGCTGTTTGCCCGCAAAGATAAGACGCTGCTGATCAGGTG 53435 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || || || ||||| || || || | ||||| || || | Sbjct 53434 GAATCCCTTCCTTGTCCTGGATTTTCGCCTTCACGTTCTCAATCGTGTCACTCGGCTCGA 53375 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || || || || || || || | ||| || |||||||||||||| Sbjct 53374 CCTCCAGGGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAAATTTGCAT 53326 Score = 109 bits (120), Expect = 6e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 ||||||| ||| | ||| || ||||| || || || ||||||||||| || ||| | Sbjct 53087 AGTCGCAGCACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGTGTGCGG 53028 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| ||||| ||||| || | ||||||||| || || || || || || Sbjct 53027 CCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGTGGAATTCCCTCC 52968 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || ||| ||| || || | |||||| | ||| || || || || Sbjct 52967 TTGTCTTGGATCTTTGCTTTTACGTTCTCGATCGTGTCGCTGGGTTCAACTTCCAGCGTG 52908 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || ||||| || || || || ||||| Sbjct 52907 ATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 52870 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || ||||| || || |||||||| ||||| ||||||||| | || | Sbjct 53771 AGCCGCAGGACAAGGTGGAGGGTCGATTCCTTCTGAATATTGTAGTCGGAGAGAGTACGC 53712 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||| ||||||||||| || | |||||| || || || || ||||| || Sbjct 53711 CCATCTTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCCGGTGGAATGCCCTCC 53652 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || ||||| || || || | |||||| | || || || || || Sbjct 53651 TTGTCCTGGATTTTAGCCTTCACATTTTCGATGGTGTCGCTAGGCTCAACCTCCAGGGTT 53592 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| || ||||| | || || ||||| || |||||| Sbjct 53591 ATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 53553 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/227 (69%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | ||| ||||| || || ||| || ||||||||||| | | Sbjct 52868 CCTCCACGAAGCCGTAGCACAAGGTGAAGGGTACTTTCTTTCTGAATGTTGTAAT--CAG 52811 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 || | || | ||| || ||||| ||||| || || |||| ||||||||| || || || Sbjct 52810 ACAGCGT-ACGGTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGA 52752 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || |||||||| ||||| || | ||||| | || || Sbjct 52751 ATTCCTTCCTTGTCCTGAATTTTCGCCTTGACATTTTCAATAGTGTCACTAGGCTCAACT 52692 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || ||||| || || | || || || ||||| ||||| Sbjct 52691 TCGAGCGTGATAGTTTTTCCCGTGAGTGTCTTCACAAAAATCTGCAT 52645 >seq74841 Length=4471 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | |||||||| || || || |||||||||||||||||||| Sbjct 2987 CCTCCGCGCAGCCGGAGGACGAGGTGAAGGGTAGACTCCTTTTGAATGTTGTAGTCCGAG 2928 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| |||||||| ||||| || ||||| | ||||||||| || || || Sbjct 2927 AGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCCGGAGGA 2868 Query 134607 ATGCCTTCTTTTTCTTGAATTTT 134629 ||||||||||| || |||||||| Sbjct 2867 ATGCCTTCTTTGTCCTGAATTTT 2845 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||| || ||||| || || |||||||| ||||||||||| ||| Sbjct 3215 CCACCACGGAGCCGCAGGACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCGGAG 3156 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || | ||| ||||||||||| || | |||||| || || || || Sbjct 3155 AGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCTGGTGGA 3096 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || ||||| || || | | |||||| | || || Sbjct 3095 ATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTTTTGATGGTGTCGCTGGGCTCGACC 3036 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||| | || |||||||| |||||||| Sbjct 3035 TCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTAACGAAGATTTGCAT 2989 >seq4323 Length=113087 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | |||||||| || || || |||||||||||||||||||| Sbjct 37124 CCTCCGCGCAGCCGGAGGACGAGGTGAAGGGTAGACTCCTTTTGAATGTTGTAGTCCGAG 37183 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| |||||||| ||||| || ||||| | ||||||||| || || || Sbjct 37184 AGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCCGGAGGA 37243 Query 134607 ATGCCTTCTTTTTCTTGAATTTT 134629 ||||||||||| || |||||||| Sbjct 37244 ATGCCTTCTTTGTCCTGAATTTT 37266 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || ||||| || || |||||||| ||||||||||| ||| Sbjct 36896 CCACCACGGAGCCGGAGGACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCGGAG 36955 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || | ||| ||||||||||| || | |||||| || || || || Sbjct 36956 AGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCTGGTGGA 37015 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || ||||| || || | | |||||| | || || Sbjct 37016 ATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTTTTGATGGTGTCGCTGGGCTCGACC 37075 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||| | || |||||||| |||||||| Sbjct 37076 TCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTAACGAAGATTTGCAT 37122 >seq176411 Length=6678 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||| || ||||| || || |||||||| ||||||||||| ||| | Sbjct 4799 CCACCACGGAGCCGCAGGACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCGGCG 4858 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || | ||| ||||||||||| || | |||||| || || || || Sbjct 4859 AGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCTGGTGGA 4918 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || ||||| || || | | |||||| | || || Sbjct 4919 ATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTTTTGATGGTGTCGCTGGGCTCGACC 4978 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||| | || |||||||| |||||||| Sbjct 4979 TCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTAACGAAGATTTGCAT 5025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504165960731680