Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_027299.1 Length=42092 Score E Sequences producing significant alignments: (Bits) Value seq121819 205 2e-48 >seq121819 Length=11006 Score = 205 bits (226), Expect = 2e-48 Identities = 423/623 (68%), Gaps = 10/623 (2%) Strand=Plus/Minus Query 25233 CTCATAGGCAACAGCCACCAGCCCGAAGGCGTCAGCGCCGTGACTTGACCAGTCATGGCT 25292 |||||||||||| || || ||||| || || || || || | ||| ||||| Sbjct 2511 CTCATAGGCAACGCACATCAAGCCGAAAGCATCGGCACCATGCGAGGCCCAATCATGTTC 2452 Query 25293 TGGCCCTAAGCCGATGCCGCGTTCTTCGTC---GCGCTTTTCGTGATACCAGCCGATCGC 25349 || || | |||||| ||| | ||||| ||| ||||||||||||||| | || Sbjct 2451 CGGTCCAAGGCCGATATTGCGCGCCTCGTCTTTGCG---TTCGTGATACCAGCCCAATGC 2395 Query 25350 GTCCAAGCCGGCCTCTG-TCGTCGCTTGGTTGAACCACATGCTGGGGAATAGACGCCGTG 25408 ||| ||||| |||| || | || ||| ||||||||| || ||||||| ||||| | Sbjct 2394 GTC-AAGCCCGCCTGTGGTTGTGTCTTTGTTGAACCAGATCGAAGGGAATAACCGCCGCG 2336 Query 25409 CCGCCTCTACGCGCTGCATTGCCGCACCCGCCCCTTGGTTCTTAACGACCTGCACTTCGA 25468 ||||||||| |||| | ||||||||| || ||||| | ||| || || | Sbjct 2335 CCGCCTCTATGCGCATCGCCGCCGCACCCTTACCCTGGTTGGGGATCACCGTGACCTCAA 2276 Query 25469 ACCCTGCGGCCCGTAGTGCGCTCTCGAATGATACGTCATGCACCTTGTCGTTAGTGCTGC 25528 | || || || | | ||||| ||| | || || ||| ||||||||||| || | | Sbjct 2275 AGCCCGCTGCTCTCAACGCGCTTTCGTAGGACACATCAAAAACCTTGTCGTTGGTCGTTC 2216 Query 25529 CATCGTGGGGCAATACGCAGAGCGCCGCCCCGTATCCGTTTGCCCGCAGCCACTCGATAT 25588 | ||||| |||| ||| |||| | |||||||| | | |||||||| | || | Sbjct 2215 CGTCGTGCGGCAGAACGATTTGCGCGCCGCCGTATCCATGCTCGCGCAGCCAGTTGACGT 2156 Query 25589 GCGCCGCCAGAGGTTGCCCCTGCGCCTCGTAGTAGTTCAGCAGGCGAATTTCGCGTCCGA 25648 ||| || ||||| || || |||||||| |||||||| | || || || || |||| Sbjct 2155 GCGTTGCTAGAGGCTGGCCAACAGCCTCGTAATAGTTCAGGACTCGTATCTCTCGCCCGA 2096 Query 25649 CGTACTGGACAATCCAGATTGCGGTTGCGTCTGACTTCTGC-CCCGTGCCGCCAATGTCC 25707 |||| | | ||| || || ||||| | ||| || ||||| || |||||||| Sbjct 2095 TAAACTGAGCGACCCATATAGCCACCGCGTCAG-CTTTGGCTCCCGTACCCCCAATGTCG 2037 Query 25708 CAGACCGCACGAATGGTCATCAAAGGATCGGCAGCGACGTGGCCTATTCTGTTCTCAGAC 25767 | | ||| || ||||||| || ||||| | |||| ||| || ||| || Sbjct 2036 AATATCGCGCGGTACGTCATCAGCGGGTCGGCTGACACGTTGCCGATCCTGCCCTGTTCT 1977 Query 25768 CGCGCTACCGTGATTGCCTTGGCGTAATATGCGCCCTCGACAACGGTTACGAACCCGCCT 25827 | ||||||| | |||||||||||| || || |||| ||||| || | || || Sbjct 1976 CTGGCTACCGACAGGCTCTTGGCGTAATACGCTCCGTCGATCACGGTGGCGTATCCACCC 1917 Query 25828 TCCCAGATGTGTTCATAATGGTC 25850 |||||||| ||||| || ||||| Sbjct 1916 TCCCAGATATGTTCGTACTGGTC 1894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134261045623632