Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_027381.1 Length=68365 Score E Sequences producing significant alignments: (Bits) Value seq194217 86.0 3e-12 seq118930 86.0 3e-12 seq103260 86.0 3e-12 >seq194217 Length=63539 Score = 86.0 bits (94), Expect = 3e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 8778 ATTTTACCTCGTTCTGGGTTAGGGCATAAACATGGTATTGTGCTTGGAAATCTTACAGGT 8837 || ||||| ||||| || ||||||||||||||||| ||||| | ||||||||| ||| Sbjct 22683 ATATTACCCCGTTCCGGATTAGGGCATAAACATGGAATTGTATTAGGAAATCTTGTTGGT 22624 Query 8838 CTCATTGATAGTGATTATCAAGGGGAACTGATGGTAAGCCTCTGGAATCGCTCTACAAAG 8897 | |||||| |||||||||||| | | || || ||||||||| || | Sbjct 22623 TTAATTGATTCTGATTATCAAGGTCCATTAATAATATCTTGCTGGAATCGTGGTAAAGTT 22564 Query 8898 CCTTTTACTATTAATCCAGGTGACCGTATTGCTCAGTTAGTTATT 8942 | | ||||||| | || || || | ||||| || ||||| ||| Sbjct 22563 TCCTATACTATTCAGCCTGGAGAGAGGATTGCGCAATTAGTGATT 22519 >seq118930 Length=1664 Score = 86.0 bits (94), Expect = 3e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 8778 ATTTTACCTCGTTCTGGGTTAGGGCATAAACATGGTATTGTGCTTGGAAATCTTACAGGT 8837 || ||||| ||||| || ||||||||||||||||| ||||| | ||||||||| ||| Sbjct 555 ATATTACCCCGTTCCGGATTAGGGCATAAACATGGAATTGTATTAGGAAATCTTGTTGGT 496 Query 8838 CTCATTGATAGTGATTATCAAGGGGAACTGATGGTAAGCCTCTGGAATCGCTCTACAAAG 8897 | |||||| |||||||||||| | | || || ||||||||| || | Sbjct 495 TTAATTGATTCTGATTATCAAGGTCCATTAATAATATCTTGCTGGAATCGTGGTAAAGTT 436 Query 8898 CCTTTTACTATTAATCCAGGTGACCGTATTGCTCAGTTAGTTATT 8942 | | ||||||| | || || || | ||||| || ||||| ||| Sbjct 435 TCCTATACTATTCAGCCTGGAGAGAGGATTGCGCAATTAGTGATT 391 >seq103260 Length=8597 Score = 86.0 bits (94), Expect = 3e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 8778 ATTTTACCTCGTTCTGGGTTAGGGCATAAACATGGTATTGTGCTTGGAAATCTTACAGGT 8837 || ||||| ||||| || ||||||||||||||||| ||||| | ||||||||| ||| Sbjct 6295 ATATTACCCCGTTCCGGATTAGGGCATAAACATGGAATTGTATTAGGAAATCTTGTTGGT 6354 Query 8838 CTCATTGATAGTGATTATCAAGGGGAACTGATGGTAAGCCTCTGGAATCGCTCTACAAAG 8897 | |||||| |||||||||||| | | || || ||||||||| || | Sbjct 6355 TTAATTGATTCTGATTATCAAGGTCCATTAATAATATCTTGCTGGAATCGTGGTAAAGTT 6414 Query 8898 CCTTTTACTATTAATCCAGGTGACCGTATTGCTCAGTTAGTTATT 8942 | | ||||||| | || || || | ||||| || ||||| ||| Sbjct 6415 TCCTATACTATTCAGCCTGGAGAGAGGATTGCGCAATTAGTGATT 6459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 218123356934024