Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_027399.1 Length=346602 Score E Sequences producing significant alignments: (Bits) Value seq124163 104 5e-17 >seq124163 Length=12495 Score = 104 bits (114), Expect = 5e-17 Identities = 228/337 (68%), Gaps = 6/337 (2%) Strand=Plus/Minus Query 38252 TAAAAAATGATCCATATGGACGCCGACATATTCTAAGTGCATGGAATGTTGGTGAGCTTG 38311 |||||| | |||| || ||| ||| ||| ||||||| |||||||| || || | Sbjct 5125 TAAAAACTAATCCTGATTCACGACGATTGATTGTAAGTGCTTGGAATGTAGGGGAATTAA 5066 Query 38312 ATGATATGGCTCTTCAACCATGTCATAGTTTTGTTCAATGGGTAGTTAGT-GATAATAAA 38370 || | ||||| | | ||||||||| | |||||| || |||| |||| | | Sbjct 5065 ATCAAATGGCCTTGCCGCCATGTCATTTACTGTTTCAATTT-TACATAGTTGATAGAACA 5007 Query 38371 CTAAGTTGTATTCTGACCCAACGCTCAGCAGATACATTCTTGGGAGTTCCACTGAATATC 38430 | |||| |||||||||| ||||||||| | || || || || || | ||||| Sbjct 5006 ATTTCCTGTAAATTGACCCAACGGTCAGCAGATGCTTTTTTAGGTGTACCTTTTAATATT 4947 Query 38431 ACATCATATTCAGTACTCACCCATATGATAGCACA--AATTACTGGATTAGAAGTTGGTG 38488 | || ||| | || | || |||||| | || | ||| || ||| | || || | Sbjct 4946 GCTTCTTATGCTTTATTAACGCATATGGTGGCTGAGCAATG--TGATTTAAAGGTAGGAG 4889 Query 38489 AATTTATCTGGAACGGTGGAGATTGTCATATTTACTTGAATCATATCGAACAAGTAAAAG 38548 ||||||| ||| || || ||||||||||||||| |||||| | || ||||| | | Sbjct 4888 AATTTATTTGGTCGGGAGGCGATTGTCATATTTACAATAATCATTTGGAGCAAGTTCACG 4829 Query 38549 AACAATTATCACGAGATACAAAAGAATTACCAAAATT 38585 | ||||| ||||| | | ||||||||| |||| Sbjct 4828 AGCAATTGTCACGTTCTCCTCGTGAATTACCACAATT 4792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1106223251248916