Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq9079 134 1e-26 seq48326 114 1e-20 seq74841 96.9 3e-15 seq4323 96.9 3e-15 >seq9079 Length=83715 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||| | |||| ||||| |||| || || ||||| ||||| |||||||| Sbjct 2878 TGCCGCCGCGAAGTCGCAGCACCAAGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCTG 2937 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | |||| |||| |||||||| || ||||| | ||||||||||| || || || | Sbjct 2938 AGAGTGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAGGTG 2997 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||| || || |||||| ||| | | | || | ||||| ||| ||||| Sbjct 2998 GGATACCCTCCTTGTCTTGGATCTTTGCTTTGACGTTCTCGATCGTGTCACTGGGTTCAA 3057 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||||| || || | |||||| |||| ||| || || ||||| ||||| Sbjct 3058 CTTCTAGCGTGATCGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 3106 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | ||| | || | || | || || ||||| ||||| |||||||| Sbjct 3106 TGCCTCCACGAAGCCGTAGCACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCTG 3165 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | || |||| ||||||||||| || || | ||||||||||| || || || | Sbjct 3166 AGAGTGTACGGCCGTCCTCGAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGTG 3225 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || |||||| ||| | | | || | ||||| ||| ||||| Sbjct 3226 GAATTCCCTCCTTGTCTTGGATCTTTGCTTTTACGTTCTCGATCGTGTCGCTGGGTTCAA 3285 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| || || || | ||||| |||| ||| || |||||||| ||||| Sbjct 3286 CTTCCAGCGTGATCGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 3334 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| | ||||| || | || | || || || || ||||||||||||||| Sbjct 2423 GCCACCGCGAAGCCGCAGGACAAGGTGGAGGGTCGATTCCTTCTGAATATTGTAGTCGGA 2482 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | ||||| |||| || | ||| || || || | |||||||||||||| ||||| || Sbjct 2483 GAGAGTGCGCCCGTCCTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCCGGTGG 2542 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||| || |||| |||| | ||||| | | ||||| Sbjct 2543 AATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTTTCGATGGTGTCGCTAGGCTCAAC 2602 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| ||||| | ||||| || || || ||||| ||||| ||||| Sbjct 2603 CTCTAGGGTTATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 2650 >seq48326 Length=57257 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | |||| ||||| || | || || ||||| || || |||||||| | Sbjct 53098 TGCCGCCACGAAGTCGCAGCACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTC-C 53040 Query 27079 TCATGT-TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 | || |||| |||| |||||||| || ||||| | ||||||||||| || || || Sbjct 53039 GAAAGTGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGT 52980 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | ||||| || || |||||| ||| | | | || | ||||| ||| |||| Sbjct 52979 GGAATTCCCTCCTTGTCTTGGATCTTTGCTTTTACGTTCTCGATCGTGTCGCTGGGTTCA 52920 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || || || | ||||| |||| ||| || |||||||| ||||| Sbjct 52919 ACTTCCAGCGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 52870 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-G 27077 |||| ||||| | ||||| || | ||| | || || || || ||||| |||||||| | Sbjct 53326 TGCCACCGCGGAGCCGCAGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAG 53267 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 | ||| ||| ||||||||||||| || |||||| | ||||||||||| |||||||| Sbjct 53266 ATAGTGT-GCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGA 53208 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | || || || || |||||| || | |||| | ||||| ||| || Sbjct 53207 GGAATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCG 53148 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || || || | ||| || || || || || ||||| || ||||| Sbjct 53147 ACTTCGAGCGTGATGGTTTTACCGGTGAGTGTCTTGACAAAAATCTGCAT 53098 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||||| ||| | || | || | || || || |||||||| |||||||| | Sbjct 53552 CCTCCGCGCAGCCGGAGGACAAGGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGAC 53493 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || ||||||| |||||||| || || | || |||||||| ||||| || || Sbjct 53492 AGGGTACGGCCGTCTTCTAGCTGTTTGCCCGCAAAGATAAGACGCTGCTGATCAGGTGGA 53433 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||| || |||| | | || | ||||| | | || || Sbjct 53432 ATCCCTTCCTTGTCCTGGATTTTCGCCTTCACGTTCTCAATCGTGTCACTCGGCTCGACC 53373 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | |||||||||||||| ||||| || |||||||| Sbjct 53372 TCCAGGGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAAATTTGCAT 53326 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| || || | ||||| || | || | || || || || ||||||||||||||| Sbjct 53781 GCCGCCACGAAGCCGCAGGACAAGGTGGAGGGTCGATTCCTTCTGAATATTGTAGTCGGA 53722 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | ||| | ||||| | ||| || || || | |||||||||||||| ||||| || Sbjct 53721 GAGAGTACGCCCATCTTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCCGGTGG 53662 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||| || |||| |||| | ||||| | | ||||| Sbjct 53661 AATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTTTCGATGGTGTCGCTAGGCTCAAC 53602 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| | ||||| || || || ||||| ||||| ||||| Sbjct 53601 CTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 53554 >seq74841 Length=4471 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||||||||||| ||| | || | || | ||||| || |||||||| |||||||| Sbjct 2989 TGCCTCCGCGCAGCCGGAGGACGAGGTGAAGGGTAGACTCCTTTTGAATGTTGTAGTCCG 2930 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | |||| ||||||||||||| || |||||| |||| |||||||| || ||||| | Sbjct 2929 AGAGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCCGGAG 2870 Query 27139 GCACACCCTCTTTATC 27154 | | || ||||| || Sbjct 2869 GAATGCCTTCTTTGTC 2854 >seq4323 Length=113087 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||||||||||| ||| | || | || | ||||| || |||||||| |||||||| Sbjct 37122 TGCCTCCGCGCAGCCGGAGGACGAGGTGAAGGGTAGACTCCTTTTGAATGTTGTAGTCCG 37181 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | |||| ||||||||||||| || |||||| |||| |||||||| || ||||| | Sbjct 37182 AGAGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCCGGAG 37241 Query 27139 GCACACCCTCTTTATC 27154 | | || ||||| || Sbjct 37242 GAATGCCTTCTTTGTC 37257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423924081813408