Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq195009 1202 0.0 >seq195009 Length=112067 Score = 1202 bits (1332), Expect = 0.0 Identities = 766/802 (96%), Gaps = 28/802 (3%) Strand=Plus/Plus Query 22119 aaaaaaTTACGCCCCGCCCTGCCACTCATCGCAGTACTGTT-GTAATTCATTAAGCATTC 22177 |||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 102594 AAAAAAATACGCCC-GCCCTGCCACTCATCGCAGTACTGTTTGTAATTCATTAAGCATTC 102652 Query 22178 TGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGG--CATCAG 22235 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 102653 TGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGGCCATCAG 102712 Query 22236 CACCT-TG-TCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTG 22293 ||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 102713 CACCTCTGATCGC--TGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTG 102770 Query 22294 TCCATATTGGCCACGTTT-AAATCAAAACTGGTGAAACTCACCC-AGGGATTGGCTGAGA 22351 |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct 102771 TCCATATTGGCCACGTTTTAAATCAAAACTGGTGAAACTCACCCCAGGGATTGGCTGAGA 102830 Query 22352 CGAAAAA-CATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACAC 22410 ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 102831 CGAAAAAACATATTC-CAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACAC 102889 Query 22411 GCCACATCTTGCGAATATATGTGTAGAAAC-TGCCGGAAATCGTCGTGGTATTCACTCCA 22469 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 102890 GCCACATCTTGCGAATATAGTGGTAGAAACCTGCCGGAAATCGTCGTGGTATTCACTCCA 102949 Query 22470 GAGCGATGAAAACG-TTTCAGTTTGCTC--ATGGAAAACGG-TGTAACAAGGGTGAACA- 22524 |||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 102950 GAGCGATGAAAACGGTTTCAGTTTGCTCTCATGGAAAACGGGTGTAACAAGGGTGAACAA 103009 Query 22525 CTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACGGAATTCCGGATGAGCATTC 22584 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 103010 CTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACGTAATTCCGGATGAGCATTC 103069 Query 22585 ATCAGGCGGGCAAGAATGTGAATAAAGGCCGGATAAAACTTGTGCTTATTTTTCTTTACG 22644 ||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 103070 ATCAGCGCGGCAAGAATGTGAATAAAG-CCGGATAAAACTTGTGCTTATTTTTCTT-ACG 103127 Query 22645 GTCTTTAAAAAGGCCGTAATATCCAGCTGAACGGTCTGGTT-ATAGGTACATTGAGCAAC 22703 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 103128 GTCTTTAAAAAGGCCGTAATATCCAGCTGAACGGTCTGGTTCATAGGTACATTGAGCAAC 103187 Query 22704 TGACTG-AAATGCCTCAAAATGTTCTTTACGATGCCATTGGGATATATCAACGGTGGTAT 22762 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 103188 TGACTGGAAATGCCTCAAAATGTTCTTTACGATGCCATTGGGATATATCAACGGTGGTAT 103247 Query 22763 ATCCAGTGAtttttttCTCCATTTTAGC-TTCCTTAGCTCCTGAAAATCTCGATAACTCA 22821 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 103248 ATCCAGTGATTTTTTTCTCCATTTTAGCTTTCCTTAGCTCCTGAAAATCTCGATAACTCA 103307 Query 22822 AAAAATACGCCCGGTAGTGATCTTATTTCATT-ATG--GTGAAAGTTGGAACCTCTTA-C 22877 |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| | Sbjct 103308 AAAAATACGCCCGGTAGTGATCTTATTTCATTAATGGTGTGAAAGTTGGAACCTCTTAGC 103367 Query 22878 GT-GCCGATCAACGTCTCATTT 22898 || ||||||||||||||||||| Sbjct 103368 GTGGCCGATCAACGTCTCATTT 103389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184017511026312