Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq139282 84.2 3e-11 >seq139282 Length=14605 Score = 84.2 bits (92), Expect = 3e-11 Identities = 198/293 (68%), Gaps = 16/293 (5%) Strand=Plus/Minus Query 11449 GCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGC 11508 ||| |||||||| || || || | | ||| |||||| | ||| ||||||||||| Sbjct 10719 GCGGTCAAAACGTCCTGGCCGTAATAAAGCGGGATCAAGTACATCAGGTCGATTAGTGGC 10660 Query 11509 CGCAATAACCACAATGCCAGTCTCATTG---TCAAAGCCATCCATCTCGGTGAGTAATTG 11565 || || || | ||| || ||| ||| ||||| |||||||| || | | ||| Sbjct 10659 GGCCATGACAATAATACC---CTCTTTGCCTTCAAAACCATCCATTTCCACTAAGAGTTG 10603 Query 11566 ATTAATTGTTTGTTCTCTCTCATCATTTGCTGG-CATACCACCAGCACTGCGTTGCTTGC 11624 ||||| ||||| |||| ||||| | | | || |||||||| || || | Sbjct 10602 ATTAAGGGTTTGCTCTCGTTCATCGTGACCACCACCTAA-ACCAGCACCACGGTGACGCC 10544 Query 11625 CCACCGCATCAATCTCATCAATGAAGACAATACATGG---TTGATT-TTCGCGGGCGATT 11680 | || ||||| || |||||||| || | |||||| || ||| || || || | Sbjct 10543 CTACGGCATCGATTTCATCAATAAAAATAATACAAGGCGCTTGCTTCTTAGCTTGA---- 10488 Query 11681 TCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 ||||| | || ||||| | |||||| |||||||||||||| || ||||| Sbjct 10487 TCAAACATGTCACGAACGCGGGAGGCACCTACACCAACAAACATTTCAACAAA 10435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626500512566400