Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq139282 95.1 1e-14 seq121920 93.3 5e-14 seq188574 82.4 9e-11 seq70405 82.4 9e-11 seq17548 82.4 9e-11 >seq139282 Length=14605 Score = 95.1 bits (104), Expect = 1e-14 Identities = 247/370 (67%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 || ||||| || ||||| || | | ||| ||||| | |||| || || || || Sbjct 10718 CGGTCAAAACGTCCTGGCCGTAATAAAGCGGGATCAAGTACATCAGGTCGATTAGTGGCG 10659 Query 14123 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 14182 || ||||||| || ||| | | ||||| |||||||| || ||||||||||| Sbjct 10658 GCCATGACAATAATACCCTCTTTGCCTTCAAAACCATCCATTTCCACTAAGAGTTGATTA 10599 Query 14183 ATGGTTTGTTCGCGTTCATCATTCGCA-GGCATACCACCCGCACTGCGTTGCTTACCGAC 14241 | |||||| || |||||||| | || | || ||| |||| || || || || Sbjct 10598 AGGGTTTGCTCTCGTTCATCGTGACCACCACCTA-AACCAGCACCACGGTGACGCCCTAC 10540 Query 14242 GGCGTCAATTTCATCGATGAAAACGATACATGG---TTGATTTTCACGGGCAACTTCAAA 14298 ||| || |||||||| || |||| ||||| || ||| || | | || ||||| Sbjct 10539 GGCATCGATTTCATCAATAAAAATAATACAAGGCGCTTGCTTCTTA---GCTTGATCAAA 10483 Query 14299 GATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGA 14358 || || || || | |||||| ||||| |||||||| || ||||||| || | || Sbjct 10482 CATGTCACGAACGCGGGAGGCACCTACACCAACAAACATTTCAACAAAATCGGAACCCGA 10423 Query 14359 ACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCC 14417 | || | | ||| || || || | |||||| || | ||| || || ||||| || | Sbjct 10422 A-ATAGTAAAGAACGGTACTTTGGCTTCACCAGCTACCGCTTTAGCTAGAAGGGTTTTAC 10364 Query 14418 CCGTCCCTGG 14427 | || || || Sbjct 10363 CGGTTCCCGG 10354 >seq121920 Length=6067 Score = 93.3 bits (102), Expect = 5e-14 Identities = 261/387 (67%), Gaps = 18/387 (5%) Strand=Plus/Plus Query 14050 CACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAAT 14109 |||| || || || || |||||||| || || || | ||| || || | || Sbjct 4494 CACGACGACCTGCCGGTCGAAGCGACCCGGCCGCAGCAACGCGGGATCGAGCACGTCGGG 4553 Query 14110 GCGGTTCGTCGCCGCGATGACAACGATGCCCGTC--TCGTTATCAAAGCCATCCATCTCA 14167 |||||| || || ||||||| | ||||||| || ||| || || || |||||||| Sbjct 4554 GCGGTTGGTGGCGGCGATGATGATGATGCCC-TCATTCGCC-TCGAACCCGTCCATCTC- 4610 Query 14168 GTCAAGA-GTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCAGGC-ATACCACCCGC 14223 | | ||| | || || | || || ||||| || ||||| || | | | ||| | | Sbjct 4611 GACGAGAAGCTGGTTCAGCGTCTGCTCGCGCTCGTCATTACCGTTGCCGAGGCCAGCGCC 4670 Query 14224 ACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTT--GATTT 14281 || | || ||||| ||||| ||||| |||||||| ||||| || || ||||| Sbjct 4671 AC---GATGACGGCCGACCGCGTCGATTTCGTCGATGAAGACGATGCAGGGCGCGGATTT 4727 Query 14282 TCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCC 14341 || | ||| || || || ||||| | | || |||||||| || |||||||| Sbjct 4728 CTTCG--CCTGTTCGAACATGTCGCGCACGCGGCTCGCGCCGACACCGACGAACATCTCG 4785 Query 14342 ACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCG 14400 ||||| | | | ||||| || | || ||| || || || || ||||||||||| || Sbjct 4786 ACAAAGTCCGAGCCGGAA-ATGGTGAAGAACGGCACACCAGCCTCGCCCGCGATGGCGCG 4844 Query 14401 GGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 |||||| | ||||| || || || || Sbjct 4845 GGCGAGCAAAGTCTTGCCGGTGCCGGG 4871 >seq188574 Length=9004 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 118767 TCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 118826 || ||||||| ||| | ||| |||||||| | ||| || ||||| ||||| || Sbjct 8585 TCGGTGCACAGGTTGCTGCACTTGATGGTGCCAAGGTTTTTCTGATTAGACTTGCGATTG 8644 Query 118827 CACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCC 118886 || ||||||||||| ||||||||||| || |||||||| | || |||| || || ||| Sbjct 8645 CAGGCATCCTTGTACAGCATGTATGGTGTGCCCGTCTCAATCTGAGACTCAAGGATGGCC 8704 >seq70405 Length=8866 Score = 82.4 bits (90), Expect = 9e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 118811 |||||||| | | || ||||||| ||| | ||| |||||||| | ||| || ||| Sbjct 3219 GTGTACTCCACGACCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCAAGGTTTTTCTGA 3160 Query 118812 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 118871 || ||||| || || ||||||||||| ||||||||||| || ||||| || | || Sbjct 3159 TTAGACTTGCGATTGCAGGCATCCTTGTACAGCATGTATGGTGTGCCCGTTTCAATCTGA 3100 Query 118872 GACTTGAGAATAGCC 118886 |||| || || ||| Sbjct 3099 GACTCAAGGATGGCC 3085 >seq17548 Length=139630 Score = 82.4 bits (90), Expect = 9e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 119001 GGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATC 119060 || || | ||| ||||| |||| | ||||| || ||||||||||| |||||||||||| Sbjct 1887 GGACACATGAGCGACCAGACACCATCTTCCTCCACGCGCTTCATGAACAGGTCTGGGATC 1946 Query 119061 CAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAAC 119120 ||||| || | || | |||||| |||| ||| || | ||| || || | Sbjct 1947 CAGAGAGCATAAAACAAGTCCCGAGCTCGAGTTTCCTCTTTGCCCGTGTTCTTCTTCAGC 2006 Query 119121 TCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 119163 || | || || | ||| || |||||||| || |||||||||| Sbjct 2007 TCAAGGAACTCGAAGATGTCTGCGTGCCAGGGCTCCAGGTACA 2049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616927114843040