Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq139282 104 3e-17 seq121920 98.7 1e-15 >seq139282 Length=14605 Score = 104 bits (114), Expect = 3e-17 Identities = 251/371 (68%), Gaps = 12/371 (3%) Strand=Plus/Minus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || ||||| || ||||| || | | ||| |||||| | |||| ||||| || ||| Sbjct 10718 CGGTCAAAACGTCCTGGCCGTAATAAAGCGGGATCAAGTACATCAGGTCGATTAGTGGCG 10659 Query 9584 GCGATGACAACAATACC-TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9642 || ||||||| |||||| | ||| | |||||||||||||| || || ||||| || Sbjct 10658 GCCATGACAATAATACCCTCTTTGCCT-TCAAAACCATCCATTTCCACTAAGAGTTGATT 10600 Query 9643 AATAGTTTGTTCCCGTTCATCAT-TCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCA 9701 || ||||| || |||||||| | | | || |||||||| || || || | Sbjct 10599 AAGGGTTTGCTCTCGTTCATCGTGACCACCACCTA-AACCAGCACCACGGTGACGCCCTA 10541 Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATGG---TTGATTTTCGCGAGCGACTTCAA 9758 ||||||| || |||||||| || | || || || ||| || | ||| |||| Sbjct 10540 CGGCATCGATTTCATCAATAAAAATAATACAAGGCGCTTGCTTCT---TAGCTTGATCAA 10484 Query 9759 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9818 | | || || || || ||| || |||||||||||||| || ||||| | | | | Sbjct 10483 ACATGTCACGAACGCGGGAGGCACCTACACCAACAAACATTTCAACAAAATCGGAACCCG 10424 Query 9819 AACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9877 || || | | ||| || || || | |||||| || | ||| || ||||| || ||| Sbjct 10423 AA-ATAGTAAAGAACGGTACTTTGGCTTCACCAGCTACCGCTTTAGCTAGAAGGGTTTTA 10365 Query 9878 CCCGTACCTGG 9888 || || || || Sbjct 10364 CCGGTTCCCGG 10354 >seq121920 Length=6067 Score = 98.7 bits (108), Expect = 1e-15 Identities = 252/375 (67%), Gaps = 18/375 (5%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || || |||||||| || || || | |||| ||| || | || ||| || || ||| Sbjct 4507 CGGTCGAAGCGACCCGGCCGCAGCAACGCGGGATCGAGCACGTCGGGGCGGTTGGTGGCG 4566 Query 9584 GCGATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAAAAGTTGG 9640 ||||||| | || || ||||| || || || |||||||| | ||| ||| Sbjct 4567 GCGATGATGATGATGCCC---TCATTCGCCTCGAACCCGTCCATCTCGACGAGAAGCTGG 4623 Query 9641 TTAATAGTTTGTTCCCGTTCATCATTCGC-TGGCATACCACCAGCACTGCGTTGCTTTCC 9699 || | || || || || || ||||| | | || | ||||| | || || || Sbjct 4624 TTCAGCGTCTGCTCGCGCTCGTCATTACCGTTGCCGAGG-CCAGCGCCACGATGACGGCC 4682 Query 9700 CACGGCATCAATCTCATCAATGAAGACGATGCATG--GTTGATT--TTCGCGAGCGACTT 9755 || || || || || || |||||||||||||| | | |||| ||||| | || Sbjct 4683 GACCGCGTCGATTTCGTCGATGAAGACGATGCAGGGCGCGGATTTCTTCGCCTG----TT 4738 Query 9756 CAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 9815 | || | || || || || | ||||| ||||| || |||||||| ||||||| | | Sbjct 4739 CGAACATGTCGCGCACGCGGCTCGCGCCGACACCGACGAACATCTCGACAAAGTCCGAGC 4798 Query 9816 CGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9874 ||||| || | || ||| || ||| || || ||||| ||||| |||||||| | |||| Sbjct 4799 CGGAA-ATGGTGAAGAACGGCACACCAGCCTCGCCCGCGATGGCGCGGGCGAGCAAAGTC 4857 Query 9875 TTACCCGTACCTGGC 9889 || || || || ||| Sbjct 4858 TTGCCGGTGCCGGGC 4872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581838489376160