Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3624 150 2e-31 seq10089 107 2e-18 seq173884 104 3e-17 >seq3624 Length=53740 Score = 150 bits (166), Expect = 2e-31 Identities = 313/458 (68%), Gaps = 16/458 (3%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 ||||| ||||| ||||||||||| || || |||| ||| || | | ||| ||| || Sbjct 4285 CCGGTGCCGATTCCCTCTGCACCATTCACGAGAACCATGGGGAGCACCGGGATGTAGTAC 4344 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTC---AGCC 151992 |||||||| | | || |||||| || ||| | ||| || | || ||| || Sbjct 4345 TCCGGCTCAATGCGCTGGTTGTCATCGTACAAGTACTCCAAGACTGGATCGTCCAAAGTG 4404 Query 151993 GGATCGAATATCCGTCGAGTCATAGGACTCAAACGC---GTGAAGATGTATCGGGAGCTG 152049 ||| ||| | | || | || || | | | || |||||||| ||||| | |||| Sbjct 4405 GGAACGATGA---GACGCGCCAGGGG--TGATA-GCATGGTGAAGATATATCGAGGGCTG 4458 Query 152050 GCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTG 152109 ||||| ||||||||||| ||||| || |||||||| || |||| || |||||| Sbjct 4459 GCCGCGTCCTTGCCACCCTGCAGCCTTGTGCCAAACTGACCGATTGGCTGCAGCAGGTTG 4518 Query 152110 AGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCT 152169 | ||||||| ||| || |||||||| ||||| || | || || | || || Sbjct 4519 ATATTGTTGGAGCCGACAAAATTCTGCGCCAAGTTGATGATGGTCGACATTAGGGAGGCC 4578 Query 152170 TCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATG 152229 || ||||| |||||||| | ||||| || | | | || |||| ||| || ||||| || Sbjct 4579 TCGCCGTGATGATACGCAGAATGCTCGGCCACGGACCCTGCCAGCTGGGCGACCTTAATT 4638 Query 152230 TC-CG-TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCA 152287 || || | ||| ||| ||| | ||| | | | | ||||||||||| || |||| Sbjct 4639 TCGCGCTTGTC--GTTGCGCTTAAAACAAGTGAAGAGAACCTTGCGCTGTCCCGGCTTCA 4696 Query 152288 AACCGTCCACCACGTGAGGAATCGAACGCTTGATGTCC 152325 |||||||||| | || |||||||||| ||||| Sbjct 4697 GCCCGTCCACCAGGGACGGGATCGAACGCTCATTGTCC 4734 Score = 138 bits (152), Expect = 1e-27 Identities = 307/457 (67%), Gaps = 14/457 (3%) Strand=Plus/Plus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || || ||||| |||||||||||||||| |||| ||| || | || || | |||| || Sbjct 4285 CCGGTGCCGATTCCCTCTGCACCATTCACGAGAACCATGGGGAGCACCGGGATGTAGTAC 4344 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTC---ACTC 117268 || ||||| | || | ||| || | ||||| | || | || ||| | | Sbjct 4345 TCCGGCTCAATGCGCTGGTTGTCATCGTACAAGTACTCCAAGACTGGATCGTCCAAAGTG 4404 Query 117269 GGATCGA--ATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTG 117326 ||| ||| | | | | || |||| ||| ||||| || || |||| ||| | Sbjct 4405 GGAACGATGAGACGCGCCAGG-----GGTGATAGCATGGTGAAGATATATCGAGGGCTGG 4459 Query 117327 CAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCA 117386 | || ||||||||||| || | || || || || || | |||| || ||||| | Sbjct 4460 CCGCGTCCTTGCCACCCTGCAGCCTTGTGCCAAACTGACCGATTGGCTGCAGCAGGTTGA 4519 Query 117387 GGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGT--ACCTTGGAGGCTCGC 117444 ||||||| ||| ||||| || || |||||||||| || || || || ||| || Sbjct 4520 TATTGTTGGAGCCGACAAAATTCTGCGCCAAGTTGATGATGGTCGACATT--AGGGAGGC 4577 Query 117445 CTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCAT 117504 ||| || || |||||||| | ||||| |||||| | || |||||||| || ||||| || Sbjct 4578 CTCGCCGTGATGATACGCAGAATGCTCGGCCACGGACCCTGCCAGCTGGGCGACCTTAAT 4637 Query 117505 GTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAG 117564 || | | ||| ||| | || | | | ||||||||||| | |||||||| Sbjct 4638 TTCGCGCTTGTCGTTGCGCTTAAAACAAGTGAAGAGAACCTTGCGCTGTCCCGGCTTCAG 4697 Query 117565 ACCATCCGCCACGTGAGGGATCGAACGCTTGATGTCC 117601 || ||| ||| | ||||||||||||| ||||| Sbjct 4698 CCCGTCCACCAGGGACGGGATCGAACGCTCATTGTCC 4734 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 118109 TGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATG 118168 ||||| || | |||||| ||| ||| | || |||||||| | ||| || | Sbjct 6276 TGGAGACCCATGATCTTGATAACATTGTTGATCTCGGCATTTTCCAAGATCTGCTTGTGG 6335 Query 118169 GTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGG 118228 ||||| ||||| || || || ||| ||| ||| ||||||||||| |||||||| ||| Sbjct 6336 GTGGCCTCCCGCACATTCAGCATCTTTCCCTTCAGCGGAAACACGCCGAACTTGTCGCGG 6395 Query 118229 CCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATA 118288 ||||| || || ||| | | || ||| || |||||||| |||||||| | || Sbjct 6396 CCCACCACTGACAGGCCCGACACGGCCAGGCTTTTGGCCGAGTCTCCCTCGGTTAGGATG 6455 Query 118289 AGAGTGCACTC 118299 || ||||| || Sbjct 6456 AGCGTGCAGTC 6466 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/187 (71%), Gaps = 8/187 (4%) Strand=Plus/Plus Query 152935 GTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTTGCGG 152994 ||||| ||||| ||||| || ||||||| || ||||||||||||||| || |||| Sbjct 6336 GTGGCCTCCCGCACATTCAGCATCTTTCCCTTCAGCGGAAACACGCCGAACTTGTCGCGG 6395 Query 152995 CCTACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATA 153054 || || || ||| || | | || ||| ||| |||||||| |||||||| | || Sbjct 6396 CCCACCACTGACAGGCCCGACACGGCCAGGCTTTTGGCCGAGTCTCCCTCGGTTAGGATG 6455 Query 153055 AGCGTACAGTCGTGAGACCGA----TGAGTACCGGCCCAGTTGGCGTCGTCAAGCTTGGG 153110 ||||| ||||| ||||| | || || || ||||||||| || ||||| || Sbjct 6456 AGCGTGCAGTC----AACCGAGTTCTTGGTGCCAGCGTCGTTGGCGTCCTCCAGCTTTGG 6511 Query 153111 GATTCCC 153117 || ||| Sbjct 6512 AATGCCC 6518 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/110 (78%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 119075 CTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCC 119134 ||||| | |||| ||||||||||| || ||||| || |||||||| || || ||| Sbjct 23768 CTGAAGATGTTGCACAGCTTGGCACCATAGCCGTTGCGGCCACCGGTGACTTTCTTCTCT 23827 Query 119135 TCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGC-TCGG 119183 ||||||||||||||||| ||| | ||||| || ||||||||| |||| Sbjct 23828 TCGTCGTTGTAGTTGGACGAGGTGAGCAGGTGGCCGAAGATGAGCGTCGG 23877 >seq10089 Length=115771 Score = 107 bits (118), Expect = 2e-18 Identities = 182/260 (70%), Gaps = 8/260 (3%) Strand=Plus/Minus Query 117346 AAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAA 117405 ||| |||||||| || || || | |||| | ||||| | ||||||| ||| ||||| Sbjct 72551 AAGGCGCGTACCAAACTGGCCGATGGGCTGTAGCAGGTTGATGTTGTTGCTGCCAACAAA 72492 Query 117406 GTTTTGAGCCAAGTTGACAATCGT--ACCTTGGAGGCTCGCCTCACCATGGTGATACGCC 117463 ||| || |||| ||||| || || || | |||| | ||||||| || || || ||| Sbjct 72491 GTTCTGCGCCAGGTTGATGATGGTGGACAT--GAGGGACACCTCACCGTGATGGTAGGCC 72434 Query 117464 GTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGAC--GTCAGGTTCT 117521 | ||||| |||||| | ||||||| ||| |||||||| || || | |||| || Sbjct 72433 GAATGCTCGGCCACGGAACCCGCCAACTGGGCCACCTTGATTTCCCGCTTGTCA--TTGC 72376 Query 117522 TCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAG 117581 ||| | ||| | || | ||||||||||| | || || ||||| || | | || Sbjct 72375 GCTTAAAGCACGTGTAGAGGACCTTGCGCTGGCCCGGTTTGAGACCGTCGACGAGCGAAG 72316 Query 117582 GGATCGAACGCTTGATGTCC 117601 |||| || |||| | ||||| Sbjct 72315 GGATGGAGCGCTCGTTGTCC 72296 Score = 107 bits (118), Expect = 2e-18 Identities = 179/257 (70%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 152071 AGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAA 152130 || ||||| |||||||| || ||||| || ||||||| ||||||| ||| || || Sbjct 72550 AGGCGCGTACCAAACTGGCCGATGGGCTGTAGCAGGTTGATGTTGTTGCTGCCAACAAAG 72491 Query 152131 TTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTC 152190 ||||| |||| || | || ||| | || | | |||||||| || || |||| Sbjct 72490 TTCTGCGCCAGGTTGATGATGGTGGACATGAGGGACACCTCACCGTGATGGTAGGCCGAA 72431 Query 152191 TGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCC--GTCGTCAGGTTCTTCT 152248 ||||| || | | | ||||||||||| |||||||| || ||| | |||| || || Sbjct 72430 TGCTCGGCCACGGAACCCGCCAACTGGGCCACCTTGATTTCCCGCTTGTCA--TTGCGCT 72373 Query 152249 TGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAA 152308 | | || | ||| | |||||||||||| ||||| | |||||| || | ||| | Sbjct 72372 TAAAGCACGTGTAGAGGACCTTGCGCTGGCCCGGTTTGAGACCGTCGACGAGCGAAGGGA 72313 Query 152309 TCGAACGCTTGATGTCC 152325 | || |||| | ||||| Sbjct 72312 TGGAGCGCTCGTTGTCC 72296 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/198 (70%), Gaps = 14/198 (7%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 ||||| || |||||||| ||||| || ||||| | ||| || | || || ||| || Sbjct 74086 CCGGTGCCAATGCCCTCGGCACCATTCACCAGCACCATGGGAAGTATGGGTATGTAGTAC 74027 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAG---CC 151992 || ||||| | ||||| |||||| | || ||| | || |||||| | ||| | || Sbjct 74026 TCAGGCTCTATTCGTTGATTGTCATCAAACAGGTAGTCCAGAACGGAGTCGTCTGATGCC 73967 Query 151993 GGATCGAATATCCGT-CGAGTC---ATAGGACTCAAACGCGTGAAGATGTATCGGGAGCT 152048 || || || |||| | ||| |||| | | |||||||||||||| | ||| Sbjct 73966 GGCATGATTAGCCGTGCCAGTGGTGATAGCATT-------GTGAAGATGTATCGAGGGCT 73914 Query 152049 GGCCGCATCCTTGCCACC 152066 ||| || ||||||||||| Sbjct 73913 GGCTGCGTCCTTGCCACC 73896 >seq173884 Length=22573 Score = 104 bits (114), Expect = 3e-17 Identities = 313/469 (67%), Gaps = 31/469 (7%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 ||||| ||||| ||||||||||| || || |||| ||| || | | ||| ||| || Sbjct 19781 CCGGTGCCGATTCCCTCTGCACCATTCACGAGAACCATGGGGAGCACCGGGATGTAGTAC 19722 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTC---AGCC 151992 |||||||| | | || |||||| || ||| | ||| || | || ||| || Sbjct 19721 TCCGGCTCTATGCGCTGGTTGTCATCGTACAAGTACTCCAAGACTGGATCGTCCAAAGTG 19662 Query 151993 GGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTG---AAGATGTATCGGGAGCTG 152049 ||| ||| | | || | || || | | | || || ||||| ||||| | |||| Sbjct 19661 GGAACGATGA---GACGCGCCAGGGG--TGATA-GCATGGTAAAGATATATCGAGGGCTG 19608 Query 152050 GCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCT-CGAGGAGGTT 152108 ||||| ||||||||||| ||||| || |||||||| ||| |||| | || ||||| Sbjct 19607 GCCGCGTCCTTGCCACCCTGCAGCCTTGTGCCAAACTGACCAATTGGCTGCCAGCAGGTT 19548 Query 152109 GAGGTTGTTGGCGCCCA-CGAAATTCTGAGCCAAATTC-ACAATCGTGCCC-----TGCA 152161 || |||| | ||| | | |||||||| ||||| || | ||||| | || | Sbjct 19547 GATATTGTGGCAGCCGAACAAAATTCTGCGCCAAGTTTGATGATCGTCGACATTAGTGGA 19488 Query 152162 GACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGAT-GTATCCCGCCAA-CTGCGC 152219 || ||| | ||||| ||||| || | || || || | | | ||||| | ||| | Sbjct 19487 GA---GCT-CGCCGTGATGATAAGCAGAATGTTCGGCCACAGGACCCCGCAAGTCTGGGG 19432 Query 152220 CACCTTCATGTCCG---TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTG 152276 | |||| || |||| | ||| ||| ||| | ||| | | | | ||||||||||| Sbjct 19431 CGCCTTAATTTCCGCGCTTGTC--GTTGCGCTTAAAACAAGAGAAGAGAACCTTGCGCTG 19374 Query 152277 GGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTCC 152325 || |||| |||||||||| | || |||||||||| ||||| Sbjct 19373 TCCCGGCTTCAGCCCGTCCACCAGGGACGGGATCGAACGCTCATTGTCC 19325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545881586423200