Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_028449.1 Length=63569 Score E Sequences producing significant alignments: (Bits) Value seq115180 152 2e-32 >seq115180 Length=148627 Score = 152 bits (168), Expect = 2e-32 Identities = 761/1185 (64%), Gaps = 38/1185 (3%) Strand=Plus/Plus Query 2531 ATAATAAGCTTTTTCTGCTTCTGCCGGAGGAGTATGGCCCAGCCTTCCCAGCAATCGTCG 2590 ||| || || | ||| || | || |||||| ||| || | || |||| ||| | Sbjct 36379 ATAGTAGGCCTCTTCCGCCTGCGCAGGAGGAATATACCCGATGGACCCGAGCAGACGTTG 36438 Query 2591 ATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTTTTCCA 2650 || ||| ||| || | ||||| || || |||| ||||| | || | | ||||||| Sbjct 36439 ATGGTTGTACTAGGCGACCCATTCCAGCGTTGCCAACTCCACGGCAGCCCTGGTTTTCCA 36498 Query 2651 GCTCTTACGG---TGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCCATCGC 2707 | | ||| || || | || || ||||| || || |||||| | ||||||| || Sbjct 36499 GGGCGCTCGGCGATGGATCAATTCGGCCTTGTACAGCCCGTTGATGGTTTCAGCCAGGGC 36558 Query 2708 GTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTTAGTCG 2767 ||||||||| ||| ||| || || || | | | || || || || || Sbjct 36559 GTTGTCATAGCTGTCCCCTCGGCTGCCGACCGACGGCTCGATGCCTGCCTCGGCCAGACG 36618 Query 2768 CTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCG---CTGTGATGGATGGTGCC 2824 || |||||| | ||||| || || || ||| |||| |||| | |||| | Sbjct 36619 TTCGGTATAGCGGATGGACACGTATTGCGATCCTCGATCGGAATGGTGAGTCAGGGTGTC 36678 Query 2825 AGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTC-GTTTCCA 2883 | ||||| ||| | ||| ||||| ||||| ||||||| |||||| ||| || || Sbjct 36679 GGTGGGACGCCGGTCATACAGGGCCTGTTCCAGGGCATCCAACACGAA-GTCTGTACTCA 36737 Query 2884 TAGACGATG-AGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGATAAACGCC 2942 | | | || || ||||| || |||||| | ||| || |||||||||| || ||| Sbjct 36738 T-GGTGTTGCTCACGCGCCAGCCGACGATGCGGCGGGCGAATACATCAATGACGAAGGCC 36796 Query 2943 ACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAGCTGGTCA 3002 ||||| | |||| ||||| || ||||| || || || | ||||| | ||| | Sbjct 36797 ACATACAGCCAGCCTTGCCAGGTCGACACGTAGGTGAAGTCCGAGACCCATAACTGATTG 36856 Query 3003 GGTCGTTCTGCCACGAACTGACGGTTTACGCGGTCGCCTGC-GGCA--ACGGCTTTCCGG 3059 || | || || ||| || || || ||||| | || || |||| | || ||| Sbjct 36857 GGCCTGTCAGCGTGGAAGTGGCGATTGACGCGAT--CCAGCGGGCAGGCCTGCGAACCGT 36914 Query 3060 CTG--ATGGTCGTACGGACCTTTTTACCCCGGAGAAC-ACCGGCAAGTCCCATAACCGCC 3116 | | ||||| || || ||| || ||||| | || || |||| ||||| | Sbjct 36915 CGGCAATGGTAGTGCGCACCCGCTTGCCCCGACGCACGCCCTGCAA-TCCCAGGCGACGC 36973 Query 3117 ATGAGACGTGCCACTGTACATCTGGCCACCCTGATTCCTTCCCGTAACAACTGACGCCAG 3176 || |||||| | || || || | |||||| || ||||| || || ||| ||||| Sbjct 36974 ATCAGACGTTCGACCGTGCAGCGGGCCACGGCAATGCCTTCGCGCTGCAGTTGATGCCAG 37033 Query 3177 ACTTTACGCACACCGTACACCTG-ATGATTTTCATCGTATACGCGCTGTATCTCTCTCTT 3235 || || || || ||||| ||||| ||| || | | | || ||| | |||||| | Sbjct 37034 ACCTTGCGTACGCCGTAGACCTGCATG-TTGGCTTGCCAGACACGCCGAATCTCTGCCAC 37092 Query 3236 CAGCCAGTCGTCGTGCTGCGCACGGGCACTGCGTTTATCCGGATGATGTCGCTGTTGCTG 3295 || | |||||| |||| || |||||||| |||||||| || | | || | Sbjct 37093 CAAGCCCTCGTCGCGCTGGCTGCGCGCACTGCGCAGTTCCGGATGTCGTTGGCG-GGCGG 37151 Query 3296 -ACAATGGTAATACGTTGACGGGGCAATATGCAGTTCGCTGCATACCGGTCCGACCCCGT 3354 | || | ||||| || ||||||| ||||| | |||| | ||| ||||||||| Sbjct 37152 CATAACGCCGATACGCCGATGGGGCAACCTGCAGCACCTTGCAGATCGGCTCGACCCCGT 37211 Query 3355 ACTGCTCACGCAGCTTATCCAGCAGTGGC-ATCATTTTTTCCAGAGGCGGTCGAACTCCG 3413 | || || || || | | ||| | | || ||| |||||||| | ||| Sbjct 37212 AGATGTCCCGGTGCCGGTCGA-TATAGGCGTTTACTTCTTCAGTTCGCGGTCGAGCGCCG 37270 Query 3414 CCTTCGCAAAATAAGCGGAAGCCTGGCGAAGGATATCGTTACTGCGGCGCAGTTCACGAT 3473 ||| || ||| |||| ||| ||||| ||||| ||||||||||| | Sbjct 37271 CCTGGGCGAAAAAAGCACTGGCCGACTTCAGGATCTCGTTGGCCCGGCGCAGTTCCTTGT 37330 Query 3474 TTTCACGTTCCAGCTCTTTCAGACGCTGACGTTCAGCGCTGGTGAGCCCACCATCACCGC 3533 | || |||||||| | |||| |||| |||||| ||||| | |||||| ||| Sbjct 37331 TCTCGCGTTCCAGGGCCTTCATGCGCTCGCGTTCA---CTGGTTGTCATGCCATCA-CGC 37386 Query 3534 ---CCCCGGT--ATCCCGCTCATGCTGGCGAACCCAGACACGCAGAGTCTCCGGCGTACA 3588 || | || ||| |||| ||| | |||||| | |||| || |||| || Sbjct 37387 ATGCCGCTGTCGATCTCGCT-GCGCTTG---ACCCAGTCCAGCAGCGTGGCCGGTACGCA 37442 Query 3589 GCCAATCTTTGGGGCAATGGAACAAATTGCCGCCCACTGTGAGTCATATTCATCCTGACT 3648 |||||||| || |||||||| | || |||||| | || ||| || | || Sbjct 37443 ACCAATCTTCGGCGCAATGGACTCGACGGCTGCCCACAGCGACGGATACTCGCCACGATG 37502 Query 3649 TTCCAGAACCATACGAATCGCCCGCTGACGGACTTCGGGGGAAAA 3693 ||| | |||| || || || || | ||||||||| |||||||| Sbjct 37503 CTCCTGCACCAGGCGTATGGCGCGTTCACGGACTTCAGGGGAAAA 37547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 202812646225720