Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq48326 138 7e-28 seq9079 132 3e-26 seq74841 84.2 1e-11 seq4323 84.2 1e-11 >seq48326 Length=57257 Score = 138 bits (152), Expect = 7e-28 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||| |||| |||||| ||||| ||| ||| || || ||||| || || || Sbjct 53097 GCCGCCACGAAGTCGCAGCACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCCGA 53038 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 |||||| || |||| || || || || |||||||| || | |||||| ||||| || || Sbjct 53037 AAGTGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGTGG 52978 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||||| |||| |||| ||| ||| | || ||||| | || | Sbjct 52977 AATTCCCTCCTTGTCTTGGATC-TTTGCTTTTACGTTCTCGATCGTGTCGCTGGGTTCAA 52919 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||||| || || || || || || || || || ||||| ||||||||| Sbjct 52918 CTTCCAGCGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCATG 52869 Score = 116 bits (128), Expect = 2e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| || | ||| || ||| |||||| |||||||| || || || ||||| || Sbjct 53315 AGCCGCAGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGATAGTGTGCGG 53256 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| || || || ||||| || || | |||||| || ||||| || | || ||| Sbjct 53255 CCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCTTCC 53196 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 ||||| ||||||| || | | ||| ||||| | ||| ||||| | || Sbjct 53195 TTGTCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACTTCGAGCGTG 53136 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || ||||||||||| | || || ||||||||||||||| Sbjct 53135 ATGGTTTTACCGGTGAGTGTCTTGACAAAAATCTGCATG 53097 Score = 98.7 bits (108), Expect = 6e-16 Identities = 142/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 ||||||||||||||| || || || || || || ||||||| || ||||| || ||||| Sbjct 53517 CTCCTTTTGAATGTTGTAGTCAGACAGGGTACGGCCGTCTTCTAGCTGTTTGCCCGCAAA 53458 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || | |||||| || || || || | || |||||||| ||| ||| | || ||| Sbjct 53457 GATAAGACGCTGCTGATCAGGTGGAATCCCTTCCTTGTCCTGGAT-TTTCGCCTTCACGT 53399 Query 34635 T-AAAATTGTGTC-TTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTC 34692 | ||| ||||| ||| ||| || |||| ||| ||||| || || || | || ||| Sbjct 53398 TCTCAATCGTGTCACTCG-GCTCGACCTCCAGGGTGATCGTCTTGCCCGTCAGAGTCTTC 53340 Query 34693 ACAAAAATCTGCATG 34707 || ||||| |||||| Sbjct 53339 ACGAAAATTTGCATG 53325 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/233 (70%), Gaps = 5/233 (2%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| || | ||| | || || || || || || |||||||| ||||| || Sbjct 52869 GCCTCCACGAAGCCGTAGCACAAGGTGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGA 52810 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || ||| ||||| || || ||||| || || | |||||| ||||| || || Sbjct 52809 CAGCGTACG---GTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGG 52753 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | ||| |||||||| ||| ||| | || || | ||| ||||| ||| | Sbjct 52752 AATTCCTTCCTTGTCC-TGAATTTTCGCCTTGACATTTTCAATAGTGTCACTAGGCTCAA 52694 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 |||| | || || ||||| || || | || |||||||||||||||||| || Sbjct 52693 CTTCGAGCGTGATAGTTTTTCCCGTGAGTGTCTTCACAAAAATCTGCATGATG 52641 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||| |||| || | ||||| || ||||| ||||| || || || || Sbjct 53781 GCCGCCACGAAGCCGCAGGACAAGGTGGAGGGTCGATTCCTTCTGAATATTGTAGTCGGA 53722 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || ||| | ||||| | || || || ||||| || | ||||||||||||||| || Sbjct 53721 GAGAGTACGCCCATCTTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCCGGTGG 53662 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCT---CT 34654 | ||||||||||| ||| ||| | || || | || ||| ||||| || Sbjct 53661 AATGCCCTCCTTGTCCTGGAT-TTTAGCCTTCACATTTTCGATGGTG---TCGCTAGGCT 53606 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || |||| |||||| || || ||||| | || ||||| || |||||||| Sbjct 53605 CAACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 53554 >seq9079 Length=83715 Score = 132 bits (146), Expect = 3e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||| |||| |||||| || || ||| ||| || |||||||| || ||||| Sbjct 2879 GCCGCCGCGAAGTCGCAGCACCAAGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCTGA 2938 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||||| || |||| || || || || |||||||| || | |||||| ||||| || || Sbjct 2939 GAGTGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAGGTGG 2998 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| |||| |||| ||| ||| | || ||||| | || | Sbjct 2999 GATACCCTCCTTGTCTTGGATC-TTTGCTTTGACGTTCTCGATCGTGTCACTGGGTTCAA 3057 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| | || |||||||| || || || || || || || ||||||||| Sbjct 3058 CTTCTAGCGTGATCGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCATG 3107 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| || | ||| | || |||||| ||| || |||||||| || ||||| Sbjct 3107 GCCTCCACGAAGCCGTAGCACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCTGA 3166 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||||| || |||| || || ||||| || ||||| || | |||||| ||||| || || Sbjct 3167 GAGTGTACGGCCGTCCTCGAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGTGG 3226 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||||| |||| |||| ||| ||| | || ||||| | || | Sbjct 3227 AATTCCCTCCTTGTCTTGGATC-TTTGCTTTTACGTTCTCGATCGTGTCGCTGGGTTCAA 3285 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||||| || ||||| || || || || || || ||||| ||||||||| Sbjct 3286 CTTCCAGCGTGATCGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCATG 3335 Score = 105 bits (116), Expect = 4e-18 Identities = 167/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| || | ||| | || || || || || || |||||||| ||||| || Sbjct 3335 GCCTCCACGAAGCCGTAGCACAAGGTGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGA 3394 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| ||||| || || ||||| || || | |||||| ||||| || || Sbjct 3395 CAGCGTACGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGG 3454 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCT-TCGCTCTCC 34656 | ||| |||||||| ||| ||| | || || | ||| ||||| ||| ||| Sbjct 3455 AATTCCTTCCTTGTCC-TGAATTTTCGCCTTGACATTTTCAATGGTGTCACTCGG-CTCA 3512 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 ||||| | || || ||||| || || | || |||||||||||||||||| || Sbjct 3513 ACTTCGAGCGTGATAGTTTTTCCCGTGAGTGTCTTCACAAAAATCTGCATGATG 3566 Score = 100 bits (110), Expect = 2e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 ||||||||||||||| || || || || || || ||||||| || ||||| || ||||| Sbjct 2687 CTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGGCCGTCTTCTAGCTGTTTGCCCGCAAA 2746 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-G 34633 || | ||| || || || || || | || |||||||| ||| ||||| || || Sbjct 2747 GATAAGACGTTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGGAT-TTTTGCCTTGACAT 2805 Query 34634 ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | ||| ||||| ||| ||||| | || || ||||||||||| | || || | Sbjct 2806 TTTCAATGGTGTCACTAGGCTCGACTTCGAGCGTGATGGTTTTACCGGTGAGTGTCTTGA 2865 Query 34694 CAAAAATCTGCATG 34707 |||||||||||||| Sbjct 2866 CAAAAATCTGCATG 2879 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| |||| || | ||||| || ||||| ||||| || || || || Sbjct 2423 GCCACCGCGAAGCCGCAGGACAAGGTGGAGGGTCGATTCCTTCTGAATATTGTAGTCGGA 2482 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || ||| |||| || | || || || ||||| || | ||||||||||||||| || Sbjct 2483 GAGAGTGCGCCCGTCCTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCCGGTGG 2542 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCT---CT 34654 | ||||||||||| ||| ||| | || || | || ||| ||||| || Sbjct 2543 AATGCCCTCCTTGTCCTGGAT-TTTAGCCTTCACATTTTCGATGGTG---TCGCTAGGCT 2598 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || | |||||| || || ||||| | || ||||| || |||||||| Sbjct 2599 CAACCTCTAGGGTTATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 2650 >seq74841 Length=4471 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| |||||||| ||||| || || || || |||| || | || || || ||||| Sbjct 3179 TCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAG 3120 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GA 34634 || | |||||||||||| || || | ||||||||||| ||| ||| | || || Sbjct 3119 ATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGAT-TTTAGCCTTCACATT 3061 Query 34635 TAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | || ||||| | ||| || |||| |||||| || || ||||| | || || || Sbjct 3060 TTTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTAAC 3001 Query 34695 AAAAATCTGCATG 34707 || || |||||| Sbjct 3000 GAAGATTTGCATG 2988 >seq4323 Length=113087 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| |||||||| ||||| || || || || |||| || | || || || ||||| Sbjct 36932 TCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAG 36991 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GA 34634 || | |||||||||||| || || | ||||||||||| ||| ||| | || || Sbjct 36992 ATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGAT-TTTAGCCTTCACATT 37050 Query 34635 TAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | || ||||| | ||| || |||| |||||| || || ||||| | || || || Sbjct 37051 TTTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTAAC 37110 Query 34695 AAAAATCTGCATG 34707 || || |||||| Sbjct 37111 GAAGATTTGCATG 37123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313981303230572