Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq48326 134 1e-26 seq9079 129 5e-25 seq74841 111 1e-19 seq4323 107 2e-18 seq176411 105 6e-18 >seq48326 Length=57257 Score = 134 bits (148), Expect = 1e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || |||||||| |||||| | || || || || || || ||| Sbjct 53325 CATGCAAATTTTCGTGAAGACTCTGACGGGCAAGACGATCACCCTGGAGGTCGAGCCGAG 53384 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| ||||||||| || || ||||| || ||||| ||||| || ||||| ||||| Sbjct 53385 TGACACGATTGAGAACGTGAAGGCGAAAATCCAGGACAAGGAAGGGATTCCACCTGATCA 53444 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | || |||||||| | |||||| | ||| | || || ||||| Sbjct 53445 GCAGCGTCTTATCTTTGCGGGCAAACAGCTAGAAGACGGCCGTACCCTGTCTGACTACAA 53504 Query 27167 CATTCAAAAGGAGTCGACC 27185 ||||||||||||||||||| Sbjct 53505 CATTCAAAAGGAGTCGACC 53523 Score = 125 bits (138), Expect = 6e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| ||||| || || || ||||| || | || || || ||||| || || Sbjct 53094 CGGCATGCAGATTTTTGTCAAGACACTCACCGGTAAAACCATCACGCTCGAAGTCGAGCC 53153 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 ||| | ||||| | ||||| ||| || || ||||| |||||||| || || || Sbjct 53154 CAGTGACACCATTGAAAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGA 53213 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 ||| |||||| | || | |||||| || || | |||||| | || | || || || Sbjct 53214 TCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAAGACGGCCGCACACTATCTGACTA 53273 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||| |||||||| ||| | ||| | || |||| | || |||||||| Sbjct 53274 CAACATTCAGAAGGAGTCCACCCTTCATCTCGTCCTGCGGCTCCGCGGTGGCAT 53327 Score = 102 bits (112), Expect = 7e-17 Identities = 138/192 (72%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || || || || |||| || || ||||| || || Sbjct 52644 CATGCAGATTTTTGTGAAGACACTCACGGGAAAAACTATCACGCTCGAAGTTGAGCCTAG 52703 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | ||||| |||||||| ||||| ||||| || || || || || Sbjct 52704 TGACACTATTGAAAATGTCAAGGCGAAAATTCAGGACAAGGAAGGAATTCCTCCTGACCA 52763 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| || | || ||| || || | || |||||||| Sbjct 52764 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGACCGTACGC---TGTCTGATTACAA 52820 Query 27167 CATTCAAAAGGA 27178 |||||| || || Sbjct 52821 CATTCAGAAAGA 52832 >seq9079 Length=83715 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||| |||| ||||| | || || || ||||| ||||| Sbjct 3107 CATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACGATCACGCTAGAAGTTGAACCCAG 3048 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| |||| |||||| ||| || |||||||| || || || ||||| || || Sbjct 3047 TGACACGATCGAGAACGTCAAAGCAAAGATCCAAGACAAGGAGGGTATCCCACCTGACCA 2988 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | |||||||| || | || ||| | || | || || ||||| Sbjct 2987 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACACTCTCAGACTACAA 2928 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || ||||| ||| |||| ||||| |||| | || || ||||| Sbjct 2927 CATTCAGAAAGAGTCCACCCTACACTTGGTGCTGCGACTTCGCGGCGGCAT 2877 Score = 125 bits (138), Expect = 6e-24 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| ||||| || || || ||||| || | || || || ||||| || || Sbjct 2882 CGGCATGCAGATTTTTGTCAAGACACTCACCGGTAAAACCATCACGCTCGAAGTCGAGCC 2823 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 ||| | ||||| | ||||| |||||| || ||||| ||||| || ||||| || Sbjct 2822 TAGTGACACCATTGAAAATGTCAAGGCAAAAATCCAGGACAAGGAAGGGATCCCACCTGA 2763 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 ||| || ||| | || | || |||||||| | |||||| | ||| | || || || Sbjct 2762 TCAGCAACGTCTTATCTTTGCGGGCAAACAGCTAGAAGACGGCCGCACCCTGTCTGACTA 2703 Query 27164 CAACATTCAAAAGGAGTCGACC 27185 |||||||||||||||||||||| Sbjct 2702 CAACATTCAAAAGGAGTCGACC 2681 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || ||| |||| |||||| | || || || ||||| ||||| Sbjct 3335 CATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACGATCACGCTGGAAGTTGAACCCAG 3276 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| |||| |||| || ||| ||| || |||||||| || || || ||||| || || Sbjct 3275 CGACACGATCGAGAACGTAAAAGCAAAGATCCAAGACAAGGAGGGAATTCCACCAGACCA 3216 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | || |||||||| | || ||| | || | || || ||||| Sbjct 3215 GCAGCGTCTCATCTTTGCTGGCAAACAGCTCGAGGACGGCCGTACACTCTCAGACTACAA 3156 Query 27167 CATTCAAAAGGAGTCGAC 27184 |||||| || ||||| || Sbjct 3155 CATTCAGAAAGAGTCCAC 3138 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || || || || |||| || || ||||| || ||| Sbjct 3563 CATGCAGATTTTTGTGAAGACACTCACGGGAAAAACTATCACGCTCGAAGTTGAGCCGAG 3504 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | ||||| |||||||| ||||| ||||| || || || || || Sbjct 3503 TGACACCATTGAAAATGTCAAGGCGAAAATTCAGGACAAGGAAGGAATTCCTCCTGACCA 3444 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| || | || ||| | || | || |||||||| Sbjct 3443 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGTACGCTGTCTGATTACAA 3384 Query 27167 CATTCAAAAGGA 27178 |||||| || || Sbjct 3383 CATTCAGAAAGA 3372 >seq74841 Length=4471 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || || ||||||||| | || || || || || || || Sbjct 2988 CATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATAACCCTGGAGGTCGAGCCCAG 3047 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || | | || || ||||| || ||||| || ||||| ||||| || || Sbjct 3048 CGACACCATCAAAAATGTGAAGGCTAAAATCCAGGACAAGGAGGGCATTCCACCAGACCA 3107 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||| | || | || ||||| || ||||| ||| | || | ||||||||||| Sbjct 3108 ACAGCGTCTCATCTTTGCAGGCAAGCAGTTGGAGGACGGCCGCACTCTCTCCGATTACAA 3167 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 |||||| ||||| |||||| | || | || |||| | || |||||| Sbjct 3168 CATTCAGAAGGAATCGACCCTCCACCTTGTCCTGCGGCTCCGTGGTGGC 3216 Score = 102 bits (112), Expect = 7e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 |||||||| |||||||||||||| || || || || |||||| | || | ||||||||| Sbjct 2845 AAAATTCAGGACAAAGAAGGCATTCCTCCGGACCAGCAGCGTCTTATTTTCGCCGGCAAG 2904 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || | |||||| | ||| | || || |||||||||||||||||||| ||| | || Sbjct 2905 CAGCTCGAAGACGGCCGCACCCTCTCGGACTACAACATTCAAAAGGAGTCTACCCTTCAC 2964 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | || | || |||| || ||||| Sbjct 2965 CTCGTCCTCCGGCTGCGCGGAGGCAT 2990 >seq4323 Length=113087 Score = 107 bits (118), Expect = 2e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || || ||||||||| | || || || || || || || Sbjct 37123 CATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATAACCCTGGAGGTCGAGCCCAG 37064 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || | | || || ||||| || ||||| || ||||| ||||| || || Sbjct 37063 CGACACCATCAAAAATGTGAAGGCTAAAATCCAGGACAAGGAGGGCATTCCACCAGACCA 37004 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||| | || | || ||||| || ||||| ||| | || | ||||||||||| Sbjct 37003 ACAGCGTCTCATCTTTGCAGGCAAGCAGTTGGAGGACGGCCGCACTCTCTCCGATTACAA 36944 Query 27167 CATTCAAAAGGAGTCGACC 27185 |||||| ||||| |||||| Sbjct 36943 CATTCAGAAGGAATCGACC 36925 Score = 102 bits (112), Expect = 7e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 |||||||| |||||||||||||| || || || || |||||| | || | ||||||||| Sbjct 37266 AAAATTCAGGACAAAGAAGGCATTCCTCCGGACCAGCAGCGTCTTATTTTCGCCGGCAAG 37207 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || | |||||| | ||| | || || |||||||||||||||||||| ||| | || Sbjct 37206 CAGCTCGAAGACGGCCGCACCCTCTCGGACTACAACATTCAAAAGGAGTCTACCCTTCAC 37147 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | || | || |||| || ||||| Sbjct 37146 CTCGTCCTCCGGCTGCGCGGAGGCAT 37121 >seq176411 Length=6678 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || ||||||||| | || || || || || || || | Sbjct 5025 ATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATAACCCTGGAGGTCGAGCCCAGC 4966 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || | | || || ||||| || ||||| || ||||| ||||| || ||| Sbjct 4965 GACACCATCAAAAATGTGAAGGCTAAAATCCAGGACAAGGAGGGCATTCCACCAGACCAA 4906 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| || ||||| ||| | || | ||||||||||| Sbjct 4905 CAGCGTCTCATCTTTGCAGGCAAGCAGTTGGAGGACGGCCGCACTCTCGCCGATTACAAC 4846 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| ||||| |||||| | || | || |||| | || |||||| Sbjct 4845 ATTCAGAAGGAATCGACCCTCCACCTTGTCCTGCGGCTCCGTGGTGGC 4798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433887536384012