Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq121339 172 2e-38 seq115184 141 3e-29 >seq121339 Length=12531 Score = 172 bits (190), Expect = 2e-38 Identities = 211/288 (73%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 40140 CGTACCGGATGACCTCGCCGCGACGCCGGTCATCGAAGTCGATGTCAACGTCGGGCATGG 40199 |||| ||||| ||||| |||| ||| || ||||||||| || | || ||||| | Sbjct 1 CGTAGCGGATCACCTCCACGCGCCGCGTTTCGCAGAAGTCGATATCGAAATCCGGCATCG 60 Query 40200 ACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGT 40259 | ||||||||||| || ||||| |||||||| | || ||| | | |||||||||| Sbjct 61 AGACGCGCTCGGGATTGAGGAAGCGCTCGAACAGCAGGCCGAGGCGGATCGGATCGAGGT 120 Query 40260 CGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGA 40319 |||| || || | | || |||| ||||||||| |||| || ||||| || |||| Sbjct 121 CGGTAATGGTCAGCGACCATGCCACCACCGAACCGGCGCCCGAACCGCGCCCCGGCCCGA 180 Query 40320 CCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACG 40379 || | | || ||||||||||| |||||||||||| |||| ||||||||| | Sbjct 181 CCGGGATGTCGCGTTCCTTGGCCCATTTGATGAAGTCGGCAACGATCAGGAAGTATCCGG 240 Query 40380 GGAAGCCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCTTGC 40427 ||||||||||||||||||| | || | |||| ||| | | |||||| Sbjct 241 GGAAGCCCATCTGGATGATGACATCCAGCTCGAACTCCAACCGCTTGC 288 >seq115184 Length=93111 Score = 141 bits (156), Expect = 3e-29 Identities = 163/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40174 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGA- 40232 |||||| | ||||| ||| ||||||||||| ||||| ||||||||||| || ||||| | Sbjct 86987 GAAGTCCACGTCAAAGTCAGGCATGGACACCCGCTCAGGGTTCAGGAAACGTTCGAACAG 87046 Query 40233 TGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAAC 40292 || | || | || ||||| || || || ||||| | || |||||| ||||| |||| Sbjct 87047 CAAGTCATAGCGCAAG-GGATCCAGATCAGTAATCCCCATGCTGTAGGCCACCAGGGAAC 87105 Query 40293 CGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGA 40352 | || |||| || || || || || || |||||| || | |||| ||||| |||| Sbjct 87106 CCGCCCCCGAACCCCGACCCGGCCCTACGGGCACGCCATTGTGCTTGCCCCAGTTAATGA 87165 Query 40353 AGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCAT 40389 |||| || |||| |||||||||| || |||||||| Sbjct 87166 AGTCCGCCACGATCAGGAAGTAGCCGGGAAAGCCCAT 87202 Score = 107 bits (118), Expect = 6e-19 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 39211 CTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTGGCC 39270 |||||||| |||||||||| |||||||||||||| |||||||||| |||||| || Sbjct 86051 CTTGGCCATCTCCTCGGGCTTTTTCTTGCCCATGGCACGACGCAGCAAGTCGGCACCACC 86110 Query 39271 CAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAG 39330 ||| ||||||| ||| ||||||| | | |||||| |||||||||| ||||| Sbjct 86111 CAGCGAGTAGCCACCGATAATCTGCGAGATCAGCATCACCTGTTCCTGGTAGACGATGAC 86170 Query 39331 CCCGTACGT 39339 |||||| || Sbjct 86171 CCCGTAGGT 86179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160034798924616