Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_028840.1 Length=111751 Score E Sequences producing significant alignments: (Bits) Value seq124163 84.2 2e-11 >seq124163 Length=12495 Score = 84.2 bits (92), Expect = 2e-11 Identities = 193/281 (69%), Gaps = 11/281 (4%) Strand=Plus/Minus Query 85515 TGCATGGAACGTAGCTGAACTGGATAAGATGGCATTACCACCATGTCACT-ATGGTTTCC 85573 ||| ||||| |||| ||| | || | ||||| || || |||||||| | | ||||| Sbjct 5088 TGCTTGGAATGTAGGGGAATTAAATCAAATGGCCTTGCCGCCATGTCATTTACTGTTTC- 5030 Query 85574 AATGTTACGTAAGTAATGATGGAT-ACTTAGATCTTAAATGGACACAACGTTCTGTAGAC 85632 ||| |||| || || |||| || | || | | |||| ||| ||||| || | ||| Sbjct 5029 AATTTTACATA-GT--TGATAGAACAATTTCCTGT-AAATTGACCCAACGGTCAGCAGAT 4974 Query 85633 TGTTTTCTAGGTCTGCCTTTCAATATTGCTAGCTATGCTTTATTAACACATATCCTGGCA 85692 |||| ||||| | ||||| ||||||||| |||||||||||||| ||||| |||| Sbjct 4973 GCTTTTTTAGGTGTACCTTTTAATATTGCTTCTTATGCTTTATTAACGCATATGGTGGCT 4914 Query 85693 AAACTGACTGGATTAAAACCCCGTTATCTTATCTTTAGT--GGGGGAGATACGCATATTT 85750 | | || ||||| | | ||| ||| || || || ||| ||||||| Sbjct 4913 GAGCAATGTGATTTAAAGGTAGGAGAATTTA--TTTGGTCGGGAGGCGATTGTCATATTT 4856 Query 85751 ATAGTGATCATATAGAGCAAGTAGAGGAGCAAATGAAACGT 85791 | | | ||||| | |||||||| | |||||| || |||| Sbjct 4855 ACAATAATCATTTGGAGCAAGTTCACGAGCAATTGTCACGT 4815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356628464271488