Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq121339 134 4e-27 seq115184 105 2e-18 >seq121339 Length=12531 Score = 134 bits (148), Expect = 4e-27 Identities = 203/289 (70%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 39047 CGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATGG 39106 |||| |||||||| || | || || || ||||||||| || | || ||||| | Sbjct 1 CGTAGCGGATCACCTCCACGCGCCGCGTTTCGCAGAAGTCGATATCGAAATCCGGCATCG 60 Query 39107 AGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGT 39166 |||| ||||| || || ||||| |||||||| | || ||| | |||| || || |||| Sbjct 61 AGACGCGCTCGGGATTGAGGAAGCGCTCGAACAGCAGGCCGAGGCGGATCGGATCGAGGT 120 Query 39167 CGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCGCGCCCAGGGCCGA 39226 |||| || || | | || ||| ||| || || | || |||||||| || |||| Sbjct 121 CGGTAATGGTCAGCGACCATGCCACCACCGAACCGGCGCCCGAACCGCGCCCCGGCCCGA 180 Query 39227 CCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACG 39286 || | | || ||||| ||||| |||||||||||| |||| |||||||| | Sbjct 181 CCGGGATGTCGCGTTCCTTGGCCCATTTGATGAAGTCGGCAACGATCAGGAAGTATCCGG 240 Query 39287 GGAACCCCATCTGGTTGATCATGTCGATCTCGTACTCGACCTGCGTGCG 39335 |||| ||||||||| |||| | || | |||| |||| | | || |||| Sbjct 241 GGAAGCCCATCTGGATGATGACATCCAGCTCGAACTCCAACCGCTTGCG 289 >seq115184 Length=93111 Score = 105 bits (116), Expect = 2e-18 Identities = 150/210 (71%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 39081 GAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGAT 39140 |||||| | ||| | ||| |||||||| || ||||||||||||||||| || ||||| | Sbjct 86987 GAAGTCCACGTCAAAGTCAGGCATGGACACCCGCTCAGGGTTCAGGAAACGTTCGAACAG 87046 Query 39141 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39200 | | | | | ||| ||||| || || ||||| | | ||| || |||| || || Sbjct 87047 CAAGTCATAGCGCAAGGGATCCAGATCAGTAATCCCCATGCTGTAGGCCACCAGGGAACC 87106 Query 39201 AGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAA 39260 ||| | || || || || || || || |||||| || | ||| ||||| ||||| Sbjct 87107 CGCCCCCGAACCCCGACCCGGCCCTACGGGCACGCCATTGTGCTTGCCCCAGTTAATGAA 87166 Query 39261 GTCGGCGACGACGAGGAAGTACGACGGGAA 39290 ||| || |||| |||||||| | |||||| Sbjct 87167 GTCCGCCACGATCAGGAAGTA-GCCGGGAA 87195 Score = 102 bits (112), Expect = 3e-17 Identities = 214/314 (68%), Gaps = 14/314 (4%) Strand=Plus/Plus Query 37940 ACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGTCCGTACGCCG 37999 |||||||||| | ||| | || || | ||||| | ||||| ||||| |||| || | Sbjct 85873 ACTCGGCCGGATGGTGGGCTTTAAGCCAGGCCGTCTGATAGGCAATGAGAGCGTAAGCAG 85932 Query 38000 CAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACC--GC 38057 | ||||| |||||| ||| | || || || || | | | || ||| ||| | | Sbjct 85933 CGGAGTGACTCTTGTTAAAGCCATAGCCTGCAAACTTTTCCATCAGGTCAAACAGCTTGA 85992 Query 38058 CCGG-ATGGCAGCCTCCGAGTAGCCTCGCTCGCTCGCCCCCTTCTGGAAGTTCACGAACT 38116 ||| | ||| || || |||| || | |||||| | || || || |||| Sbjct 85993 CCGCCAATTCAGGGTC---GTGGCCTTTCTTGACCGCCCCTTCCTCAAA---CA-GAACC 86045 Query 38117 C----CTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCC 38172 | |||||||| | |||||||||| |||||||||||||| ||||| || | |||||| Sbjct 86046 CGGTGCTTGGCCATCTCCTCGGGCTTTTTCTTGCCCATGGCACGACGCAGCAAGTCGGCA 86105 Query 38173 TGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATG 38232 ||| || | ||| || | | ||||||| | | |||||| |||||||||| | Sbjct 86106 CCACCCAGCGAGTAGCCACCGATAATCTGCGAGATCAGCATCACCTGTTCCTGGTAGACG 86165 Query 38233 ATGAGCCCGAAGGT 38246 |||| |||| |||| Sbjct 86166 ATGACCCCGTAGGT 86179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159345200174088