Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_028954.1 Length=36065 Score E Sequences producing significant alignments: (Bits) Value seq121807 104 5e-18 seq121347 104 5e-18 >seq121807 Length=11772 Score = 104 bits (114), Expect = 5e-18 Identities = 185/270 (69%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 21964 GGGCAGGACCCCGAGATTCGGACATTCCAGAACGGCGGCAAGGTGGCGAACCTGCGCATT 22023 |||| |||||||| || || |||||||| ||||||||||||| |||||||||||| Sbjct 2615 GGGCGTGACCCCGAATCGCGCACGTTCCAGAATGGCGGCAAGGTGGTGAACCTGCGCATC 2556 Query 22024 GCCACCACCCGCCGGTGGAAGTCCAAGAACACGGGCGAGGTGCAGGAAGAAACCGAATGG 22083 ||||| | ||||||| |||| |||||| |||| ||||||||| Sbjct 2555 GCCACGTCGGAAACGTGGAAGGATCGCAACAGCGGCGAGCGCAAGGAGCGCACCGAATGG 2496 Query 22084 CATTCGGTCGTTGTGACCAATGAGGCCCTTGTCAACAACGTGGAACGCTATCTGAAAAAA 22143 |||||||||| | ||| |||| || | ||| || ||| || | |||| || Sbjct 2495 CATTCGGTCGCGATCTTCAACGAGGGGCTCGCAAACGTCGCGGAGCGTTTTCTGCGCAAG 2436 Query 22144 GGTTCCTATGTCCGAATTGAGGGGCGCTTGCGGACCCGAAAATGGCAGGATCAGAACGGG 22203 || || | ||| || ||||| | | | ||| || || |||||||||||| | || Sbjct 2435 GGATCGAAGGTCTATATCGAGGGCCAGCTCCAGACGCGTAAGTGGCAGGATCAGCAGGGC 2376 Query 22204 ACCGATCGCTACACAACCGAAATCGTGGTG 22233 || ||||| | |||||||||||| || Sbjct 2375 CAGGACCGCTATTCGACCGAAATCGTGTTG 2346 >seq121347 Length=11177 Score = 104 bits (114), Expect = 5e-18 Identities = 185/270 (69%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 21964 GGGCAGGACCCCGAGATTCGGACATTCCAGAACGGCGGCAAGGTGGCGAACCTGCGCATT 22023 |||| |||||||| || || |||||||| ||||||||||||| |||||||||||| Sbjct 9159 GGGCGTGACCCCGAATCGCGCACGTTCCAGAATGGCGGCAAGGTGGTGAACCTGCGCATC 9218 Query 22024 GCCACCACCCGCCGGTGGAAGTCCAAGAACACGGGCGAGGTGCAGGAAGAAACCGAATGG 22083 ||||| | ||||||| |||| |||||| |||| ||||||||| Sbjct 9219 GCCACGTCGGAAACGTGGAAGGATCGCAACAGCGGCGAGCGCAAGGAGCGCACCGAATGG 9278 Query 22084 CATTCGGTCGTTGTGACCAATGAGGCCCTTGTCAACAACGTGGAACGCTATCTGAAAAAA 22143 |||||||||| | ||| |||| || | ||| || ||| || | |||| || Sbjct 9279 CATTCGGTCGCGATCTTCAACGAGGGGCTCGCAAACGTCGCGGAGCGTTTTCTGCGCAAG 9338 Query 22144 GGTTCCTATGTCCGAATTGAGGGGCGCTTGCGGACCCGAAAATGGCAGGATCAGAACGGG 22203 || || | ||| || ||||| | | | ||| || || |||||||||||| | || Sbjct 9339 GGATCGAAGGTCTATATCGAGGGCCAGCTCCAGACGCGTAAGTGGCAGGATCAGCAGGGC 9398 Query 22204 ACCGATCGCTACACAACCGAAATCGTGGTG 22233 || ||||| | |||||||||||| || Sbjct 9399 CAGGACCGCTATTCGACCGAAATCGTGTTG 9428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 115019324931816