Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq121339 122 3e-23 seq115184 100 9e-17 >seq121339 Length=12531 Score = 122 bits (134), Expect = 3e-23 Identities = 190/272 (70%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 39480 CGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATGG 39539 |||| |||||||| || | || || || ||||||||| || | || ||||| | Sbjct 1 CGTAGCGGATCACCTCCACGCGCCGCGTTTCGCAGAAGTCGATATCGAAATCCGGCATCG 60 Query 39540 AGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGT 39599 |||||||||| || || ||||| |||||||| | || ||| | |||| || || |||| Sbjct 61 AGACGCGCTCGGGATTGAGGAAGCGCTCGAACAGCAGGCCGAGGCGGATCGGATCGAGGT 120 Query 39600 CGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGA 39659 |||| || || | | || ||| ||| || || | || || ||||| || |||| Sbjct 121 CGGTAATGGTCAGCGACCATGCCACCACCGAACCGGCGCCCGAACCGCGCCCCGGCCCGA 180 Query 39660 CCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACG 39719 || | || ||||| ||||| |||||||||||| |||| |||||||| | Sbjct 181 CCGGGATGTCGCGTTCCTTGGCCCATTTGATGAAGTCGGCAACGATCAGGAAGTATCCGG 240 Query 39720 GGAACCCCATCTGGTTGATCATGTCGATCTCG 39751 |||| ||||||||| |||| | || | |||| Sbjct 241 GGAAGCCCATCTGGATGATGACATCCAGCTCG 272 >seq115184 Length=93111 Score = 100 bits (110), Expect = 9e-17 Identities = 149/210 (71%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 39514 GAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGAT 39573 |||||| | ||| | ||| |||||||| || ||||||||||||||||| || ||||| | Sbjct 86987 GAAGTCCACGTCAAAGTCAGGCATGGACACCCGCTCAGGGTTCAGGAAACGTTCGAACAG 87046 Query 39574 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39633 | | | | | ||| ||||| || || ||||| | | ||| || |||| || || Sbjct 87047 CAAGTCATAGCGCAAGGGATCCAGATCAGTAATCCCCATGCTGTAGGCCACCAGGGAACC 87106 Query 39634 AGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAA 39693 ||| | || || || || || || || ||| || || | ||| ||||| ||||| Sbjct 87107 CGCCCCCGAACCCCGACCCGGCCCTACGGGCACGCCATTGTGCTTGCCCCAGTTAATGAA 87166 Query 39694 GTCGGCGACGACGAGGAAGTACGACGGGAA 39723 ||| || |||| |||||||| | |||||| Sbjct 87167 GTCCGCCACGATCAGGAAGTA-GCCGGGAA 87195 Score = 96.9 bits (106), Expect = 1e-15 Identities = 213/314 (68%), Gaps = 14/314 (4%) Strand=Plus/Plus Query 38373 ACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGTCCGTACGCCG 38432 |||||||||| | ||| | || || | ||||| | ||||| ||||| |||| || | Sbjct 85873 ACTCGGCCGGATGGTGGGCTTTAAGCCAGGCCGTCTGATAGGCAATGAGAGCGTAAGCAG 85932 Query 38433 CAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACC--GC 38490 | ||||| |||||| ||| | || || || || | | | || ||| ||| | | Sbjct 85933 CGGAGTGACTCTTGTTAAAGCCATAGCCTGCAAACTTTTCCATCAGGTCAAACAGCTTGA 85992 Query 38491 CCGG-ATGGCAGCGTCCGAGTAGCCTCGCTCGCTTGCTCCCTTCTGGAAGTTCACGAACT 38549 ||| | ||| ||| || |||| || | || || | || || || |||| Sbjct 85993 CCGCCAATTCAGGGTC---GTGGCCTTTCTTGACCGCCCCTTCCTCAAA---CA-GAACC 86045 Query 38550 C----CTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCC 38605 | |||||||| | |||||||||| |||||||||||||| ||||| || | |||||| Sbjct 86046 CGGTGCTTGGCCATCTCCTCGGGCTTTTTCTTGCCCATGGCACGACGCAGCAAGTCGGCA 86105 Query 38606 TGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATG 38665 ||| || | ||| || | | ||||||| | | |||||| |||||||||| | Sbjct 86106 CCACCCAGCGAGTAGCCACCGATAATCTGCGAGATCAGCATCACCTGTTCCTGGTAGACG 86165 Query 38666 ATGAGCCCGAAGGT 38679 |||| |||| |||| Sbjct 86166 ATGACCCCGTAGGT 86179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159868784410600