Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_029046.1 Length=50827 Score E Sequences producing significant alignments: (Bits) Value seq121772 95.1 4e-15 seq121320 86.0 2e-12 >seq121772 Length=16127 Score = 95.1 bits (104), Expect = 4e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 18116 CGGCAATCGGGTCAATGAGATCGCCGAGATCACCTCCGGCTTGAAGTCGCTCGCCAGAGA 18175 ||||||||| || | || ||| | ||||| | ||| |||||| |||| |||| || Sbjct 8372 CGGCAATCGCGTGCAGGAAATCTCGGAGATTTCGCGCGGATTGAAGACGCTGGCCAAGGA 8313 Query 18176 GCTCGATATCGCCGTCGTTTTGCTGTCGCAGCTTAATCGAGCAGTCGAG-AGCAGAGAGG 18234 | | | | || | ||| || ||||| | || || |||||| ||| | |||| Sbjct 8312 TATGAACGTGCCGGTGCTGGCGCTCTCCCAGCTCAGCCGCGCGGTCGAGCAGC-GCGAGG 8254 Query 18235 ATAAGCGACCTCTTCTCTCAGACCTTCGCGATTCCGGTGCGATCGAGCAGGACGCCGACA 18294 | ||||| || | ||||| || || ||||| ||||| |||| |||||||||||||||| Sbjct 8253 ACAAGCGCCCGCAGCTCTCCGATCTGCGCGAATCCGGCTCGATTGAGCAGGACGCCGACA 8194 Query 18295 TGATCGCGTTCTTGTTCCGTGAGG 18318 || | |||| ||||||| |||| Sbjct 8193 TGGTGTGGTTCGTGTTCCGCGAGG 8170 >seq121320 Length=18040 Score = 86.0 bits (94), Expect = 2e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| || |||||||||||||||||| ||||||||||| ||||| ||||||| |||| Sbjct 20 CGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCACAGGTTCAAATC 79 Query 21210 CTGTCTCCGCAACCA 21224 ||||| ||||||||| Sbjct 80 CTGTCCCCGCAACCA 94 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162148291391512