Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_029093.1 Length=75796 Score E Sequences producing significant alignments: (Bits) Value seq122023 233 9e-57 seq121528 113 2e-20 >seq122023 Length=4177 Score = 233 bits (258), Expect = 9e-57 Identities = 515/769 (67%), Gaps = 11/769 (1%) Strand=Plus/Minus Query 65755 TTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCC 65814 || |||||||| | ||| |||| ||| || ||| |||| || ||| | || | Sbjct 3471 TTTCCACCGGCAGTCTCGGGTTGGATATCGCGCTTGGCGTCGGCGGCCTGCCGCGCGGGC 3412 Query 65815 GGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGG 65874 || | || || || ||||| || ||| || || ||| | || || ||||| || Sbjct 3411 GGATCGTCGAGATTTACGGGCCGGAAAGCTCGGGCAAGACCACGCTCGCGCTCCATGCCA 3352 Query 65875 TGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGG 65934 | || | ||||||||| || || | || || | | |||| || || || | || | Sbjct 3351 TCGCGGAGGCGCAGAAGCTTGGCGGGACGGCGGCGTTCGTCGATGCCGAACATGCGCTCG 3292 Query 65935 ACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGG 65994 | || | || |||||| |||||| || ||| || || | | | | ||||| | Sbjct 3291 ATCCGGTCTATGCCAAGAAGCTCGGCGTCGACATCAACGAGATGATCATCTCGCAGCCCG 3232 Query 65995 ACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCA 66054 | || || |||||||| ||||||||||| || | || || || | | | Sbjct 3231 ATACCGGTGAGCAGGCGCTGGAGATCGTCGATACTTTGGTGCGCTCGAACGCGATCGACG 3172 Query 66055 TCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCG 66114 | | || | || || || || || || ||||||||||||||| |||| ||||| || | Sbjct 3171 TGCTGGTGATCGATTCGGTCGCCGCGCTCGTGCCGCGCGCCGAGATCGAGGGCGAGATGG 3112 Query 66115 GGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCG 66174 | ||||| || |||||||| || |||||||| ||| ||||| |||||||||| |||| Sbjct 3111 GCGACAGCCATGTCGGCCTCCAGGCGCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCG 3052 Query 66175 GCACCATCTCCAGCACCAACACGCTGACGC----TCTGGGTCAACCAGTTGCGCGAGAAG 66230 |||| || |||| | | ||||| | | ||| |||||||| | ||| |||| Sbjct 3051 GCACGAT---CAGC-CGCTCGCGCTGCCTCGTCATCTTCATCAACCAGATCCGCATGAAG 2996 Query 66231 ATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTC 66290 ||||| |||| |||||| || ||| || || || |||||||| || ||| ||| Sbjct 2995 ATCGG---CGTGATGTACGGCTCGCCCGAAACGACGACCGGCGGCAATGCGCTGAAATTC 2939 Query 66291 TACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCT 66350 |||||||| ||||| | ||| | || |||| || | | ||||| | || ||||| Sbjct 2938 TACGCCTCGGTCCGGCTCGATATTCGCCGCACCGGCTCGATCAAGGATCGTGACGAGGCG 2879 Query 66351 GTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAAC 66410 |||||||| ||| || ||||| |||||||||||| | ||||||||| | | Sbjct 2878 ATCGGCAACACGGTCCGCGTCAAGGTGGTCAAGAACAAGGTCGCCCCGCCGTTCAAGCAG 2819 Query 66411 GCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTG 66470 | ||||||| | || ||| ||| |||||||| || | ||| | ||||| || Sbjct 2818 GTCGAGTTCGACATCATGTTCGGCGAGGGCATTTCCAAGCTCGGCGAGGTGCTCGATCTC 2759 Query 66471 GCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACG 66519 | |||| | || ||||| | || ||||| | ||||||| |||| Sbjct 2758 GGCGTGAAGGCTGGGCTGGTCGAAAAATCGGGGTCGTGGTTCAGCTACG 2710 >seq121528 Length=3295 Score = 113 bits (124), Expect = 2e-20 Identities = 201/293 (69%), Gaps = 3/293 (1%) Strand=Plus/Plus Query 66227 GAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAG 66286 |||||||||| ||| |||||| || ||| || || || |||||||| || ||| Sbjct 6 GAAGATCGGC---GTGATGTACGGCTCGCCCGAAACGACGACCGGCGGCAATGCGCTGAA 62 Query 66287 GTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGA 66346 ||||||||||| ||||| | ||| | || |||| || | | ||||| | || || Sbjct 63 ATTCTACGCCTCGGTCCGGCTCGATATTCGCCGCACCGGCTCGATCAAGGATCGTGACGA 122 Query 66347 GGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCG 66406 ||| |||||||| ||| || ||||| |||||||||||| | ||||||||| | Sbjct 123 GGCGATCGGCAACACGGTCCGCGTCAAGGTGGTCAAGAACAAGGTCGCCCCGCCGTTCAA 182 Query 66407 CAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGA 66466 | | ||||||| | || ||| ||| |||||||| || | ||| | ||||| Sbjct 183 GCAGGTCGAGTTCGACATCATGTTCGGCGAGGGCATTTCCAAGCTCGGCGAGGTGCTCGA 242 Query 66467 CCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACG 66519 || | |||| | || ||||| | || ||||| | ||||||| |||| Sbjct 243 TCTCGGCGTGAAGGCTGGGCTGGTCGAAAAATCGGGGTCGTGGTTCAGCTACG 295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 241846019835068