Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq48326 111 1e-19 seq9079 111 1e-19 seq176411 86.0 5e-12 >seq48326 Length=57257 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| ||||| || || || || | || || || |||| || ||||||||||||||||| Sbjct 53517 CTCCTTTTGAATGTTGTAGTCAGACAGGGTACGGCCGTCTTCTAGCTGTTTGCCCGCAAA 53458 Query 39153 TATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG 39211 |||||||||||||| || ||||| | || || |||||| ||||||| || | Sbjct 53457 GATAAGACGCTGCTGATCAGGTGGAATCCCT-TCCTTGTCCTGGATTTTCGCCTTCACGT 53399 Query 39212 TCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 || | | ||| || |||| ||| || |||| ||||| | || |||||||| || || | Sbjct 53398 TCTCAATCGTGTCACTCGGCTCGACCTCCAGGGTGATCGTCTTGCCCGTCAGAGTCTTCA 53339 Query 39272 CAAAGATTTGCAT 39284 | || |||||||| Sbjct 53338 CGAAAATTTGCAT 53326 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| |||||| || || || || || | |||||| || |||| || Sbjct 53079 CACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGTGTGCGGCCGTCCTC 53020 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| ||||| || |||||||||||||| | || | | ||| ||||| Sbjct 53019 GAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTG 52960 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || ||| | || | | ||| ||||| | || || |||| |||||| | || Sbjct 52959 GATCTTTGCTTTTACGTTCTCGATCGTGTCGCTGGGTTCAACTTCCAGCGTGATTGTCTT 52900 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| || || |||||||| ||||| Sbjct 52899 GCCAGTCAAAGTCTTGACAAAGATCTGCAT 52870 Score = 100 bits (110), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| | | |||| ||| | || || || || ||||| || || || ||||| Sbjct 52872 CATGCCTCCACGAAGCCGTAGCACAAGGTGAAGGGTACTTTCTTTCTGAATGTTGTAATC 52813 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 | || || || ||| |||||||| ||||| || || || |||||||||||||| | Sbjct 52812 AGACAGCGTACG---GTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGG 52756 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | | || |||||| |||||| |||| | | | || || || | ||| Sbjct 52755 AGGAATTCCTTCCTTGTCCTGAATTTTCGCCTTGACATTTTCAATAGTGTCACTAGGCTC 52696 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || | ||||||| |||||||||| || || || ||||| || ||||| Sbjct 52695 AACTTCGAGCGTGATAGTTTTTCCCGTGAGTGTCTTCACAAAAATCTGCAT 52645 >seq9079 Length=83715 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| | | |||| ||| | || || || || ||||| || || || ||||| Sbjct 3332 CATGCCTCCACGAAGCCGTAGCACAAGGTGAAGGGTACTTTCTTTCTGAATGTTGTAATC 3391 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 | || || || |||| |||||||| ||||| || || || |||||||||||||| | Sbjct 3392 AGACAGCGTACGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGG 3451 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | | || |||||| |||||| |||| | | | || || |||| ||| Sbjct 3452 AGGAATTCCTTCCTTGTCCTGAATTTTCGCCTTGACATTTTCAATGGTGTCACTCGGCTC 3511 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || | ||||||| |||||||||| || || || ||||| || ||||| Sbjct 3512 AACTTCGAGCGTGATAGTTTTTCCCGTGAGTGTCTTCACAAAAATCTGCAT 3562 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| ||||| ||| |||||| || || || || || | ||||| || |||| || Sbjct 2897 CACCAAGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGTGTGCGGCCGTCCTC 2956 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||||| ||||| ||||| || |||||||||||||| |||||| | | ||| ||||| Sbjct 2957 GAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAGGTGGG-ATACCCTCCTTGTCTT 3015 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || ||||| || | | ||| || || | || || || | |||||| ||| Sbjct 3016 GGATCTTTGCTTTGACGTTCTCGATCGTGTCACTGGGTTCAACTTCTAGCGTGATCGTTT 3075 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || |||| || || || ||||| ||||| Sbjct 3076 TGCCAGTCAAAGTCTTGACGAAGATCTGCAT 3106 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| | | |||| ||| | || || ||| |||||| || || || || || Sbjct 3104 CATGCCTCCACGAAGCCGTAGCACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTC 3163 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 | ||||| || |||| || ||||||||||| ||||| || |||||||||||||| | Sbjct 3164 TGAGAGTGTACGGCCGTCCTCGAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGG 3223 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | | ||| ||||| ||| || ||| | || | | ||| ||||| | || Sbjct 3224 TGGAATTCCCTCCTTGTCTTGGATCTTTGCTTTTACGTTCTCGATCGTGTCGCTGGGTTC 3283 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| |||||| | || || |||| || || |||||||| ||||| Sbjct 3284 AACTTCCAGCGTGATCGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 3334 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| ||||| || || || || | || || || |||| || ||||||||||||||||| Sbjct 2687 CTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGGCCGTCTTCTAGCTGTTTGCCCGCAAA 2746 Query 39153 TATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG 39211 |||||||| ||||| || |||||| | || || |||||| |||||| |||| Sbjct 2747 GATAAGACGTTGCTGATCAGGTGGGATCCCT-TCCTTGTCCTGGATTTTTGCCTTGACAT 2805 Query 39212 TCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || || || | ||| || || | |||||| |||| || || || || || | Sbjct 2806 TTTCAATGGTGTCACTAGGCTCGACTTCGAGCGTGATGGTTTTACCGGTGAGTGTCTTGA 2865 Query 39272 CAAAGATTTGCAT 39284 |||| || ||||| Sbjct 2866 CAAAAATCTGCAT 2878 >seq176411 Length=6678 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || || || |||||||| || || || |||| || | ||| ||||| ||||| Sbjct 4835 TCCTTCTGAATGTTGTAATCGGCGAGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAG 4894 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || |||||||| ||||| | || | || ||| |||||| |||||| || | | Sbjct 4895 ATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTT 4954 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | || ||||| | ||| || |||| || || | || || || || || ||||| Sbjct 4955 TTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTAACG 5014 Query 39274 AAGATTTGCATC 39285 |||||||||||| Sbjct 5015 AAGATTTGCATC 5026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428524318287692