Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq9079 118 7e-22 seq48326 116 2e-21 seq176411 98.7 7e-16 seq74841 95.1 8e-15 seq4323 95.1 8e-15 >seq9079 Length=83715 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || ||||| || ||||| ||||| |||||||| || | | Sbjct 2878 ATGCAGATTTTTGTCAAGACACTCACCGGTAAAACCATCACGCTCGAAGTCGAGCCTAGT 2819 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || |||||| ||||| ||||| | || || ||||| Sbjct 2818 GACACCATTGAAAATGTCAAGGCAAAAATCCAGGACAAGGAAGGGATCCCACCTGATCAG 2759 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||| |||||||| || ||||||| ||||| | || |||||| Sbjct 2758 CAACGTCTTATCTTTGCGGGCAAACAGCTAGAAGACGGCCGCACCCTGTCTGACTACAAC 2699 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||| ||||| || | || | || | || |||| |||||| Sbjct 2698 ATTCAAAAGGAGTCGACCCTTCACCTTGTCCTCCGGCTGCGCGGAGGA 2651 Score = 114 bits (126), Expect = 9e-21 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || |||||||||||||| ||||| ||||||||||| | | Sbjct 3562 ATGCAGATTTTTGTGAAGACACTCACGGGAAAAACTATCACGCTCGAAGTTGAGCCGAGT 3503 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || |||||| ||||| ||||| | || || || || Sbjct 3502 GACACCATTGAAAATGTCAAGGCGAAAATTCAGGACAAGGAAGGAATTCCTCCTGACCAG 3443 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || |||||||| || || || |||| || || | ||||||||| Sbjct 3442 CAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGTACGCTGTCTGATTACAAC 3383 Query 23791 ATACAAAAAGA 23801 || || ||||| Sbjct 3382 ATTCAGAAAGA 3372 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || || ||||||||||| || |||||||| ||| Sbjct 3106 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACGATCACGCTAGAAGTTGAACCCAGT 3047 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| ||| || ||||| || ||| | || || || || Sbjct 3046 GACACGATCGAGAACGTCAAAGCAAAGATCCAAGACAAGGAGGGTATCCCACCTGACCAG 2987 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| || || || |||| ||||| | || |||||| Sbjct 2986 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACACTCTCAGACTACAAC 2927 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || ||||||||||| |||| || || Sbjct 2926 ATTCAGAAAGAGTCCACCCTACACTTGGT 2898 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || | || || || |||||||| || |||||||| ||| Sbjct 3334 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACGATCACGCTGGAAGTTGAACCCAGC 3275 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | ||||| ||| || ||||| || || | || ||||| || Sbjct 3274 GACACGATCGAGAACGTAAAAGCAAAGATCCAAGACAAGGAGGGAATTCCACCAGACCAG 3215 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| |||||||| || || |||| || || | || |||||| Sbjct 3214 CAGCGTCTCATCTTTGCTGGCAAACAGCTCGAGGACGGCCGTACACTCTCAGACTACAAC 3155 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 3154 ATTCAGAAAGAGTCCAC 3138 >seq48326 Length=57257 Score = 116 bits (128), Expect = 2e-21 Identities = 142/192 (74%), Gaps = 5/192 (3%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || |||||||||||||| ||||| ||||||||||| | | Sbjct 52645 ATGCAGATTTTTGTGAAGACACTCACGGGAAAAACTATCACGCTCGAAGTTGAGCCTAGT 52704 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||||| | || |||||| ||||| ||||| | || || || || Sbjct 52705 GACACTATTGAAAATGTCAAGGCGAAAATTCAGGACAAGGAAGGAATTCCTCCTGACCAG 52764 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA-CGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || || || || || |||| | | |||||||| Sbjct 52765 CAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGACCGTACGCTGTCT----GATTACAA 52820 Query 23790 CATACAAAAAGA 23801 ||| || ||||| Sbjct 52821 CATTCAGAAAGA 52832 Score = 116 bits (128), Expect = 2e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || ||||| || ||||| ||||| |||||||| || ||| Sbjct 53098 ATGCAGATTTTTGTCAAGACACTCACCGGTAAAACCATCACGCTCGAAGTCGAGCCCAGT 53157 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || ||| || ||||| ||||| | || || ||||| Sbjct 53158 GACACCATTGAAAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAG 53217 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || ||||| || || || ||||||| ||||| || || |||||| Sbjct 53218 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAAGACGGCCGCACACTATCTGACTACAAC 53277 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 53278 ATTCAGAAGGAGTCCAC 53294 Score = 102 bits (112), Expect = 5e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || | || || || || ||||| || |||||||| ||| Sbjct 52870 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACAATCACGCTGGAAGTTGAACCCAGC 52929 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | ||||| ||| || ||||| || || | || ||||| || Sbjct 52930 GACACGATCGAGAACGTAAAAGCAAAGATCCAAGACAAGGAGGGAATTCCACCAGACCAG 52989 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTACA 23788 |||||| | || ||||||||||| || || || |||| || |||||| | || |||| Sbjct 52990 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACACTTTCG--GACTACA 53047 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || ||||||||||| Sbjct 53048 ACATCCAGAAAGAGTCCAC 53066 >seq176411 Length=6678 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||| |||||||| || || || || || || || || || ||| Sbjct 5025 ATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATAACCCTGGAGGTCGAGCCCAGC 4966 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | ||| | || ||||| ||||| || || | || ||||| ||| Sbjct 4965 GACACCATCAAAAATGTGAAGGCTAAAATCCAGGACAAGGAGGGCATTCCACCAGACCAA 4906 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| ||||| || |||| |||| |||||| | | |||||||||| Sbjct 4905 CAGCGTCTCATCTTTGCAGGCAAGCAGTTGGAGGACGGCCGCACTCTCGCCGATTACAAC 4846 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || || || Sbjct 4845 ATTCAGAAGGAATCGAC 4829 >seq74841 Length=4471 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||| |||||||| || || || || || || || || || ||| Sbjct 2989 ATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATAACCCTGGAGGTCGAGCCCAGC 3048 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | ||| | || ||||| ||||| || || | || ||||| ||| Sbjct 3049 GACACCATCAAAAATGTGAAGGCTAAAATCCAGGACAAGGAGGGCATTCCACCAGACCAA 3108 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| ||||| || |||| |||| |||||| | |||||||||| Sbjct 3109 CAGCGTCTCATCTTTGCAGGCAAGCAGTTGGAGGACGGCCGCACTCTCTCCGATTACAAC 3168 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || || || Sbjct 3169 ATTCAGAAGGAATCGAC 3185 >seq4323 Length=113087 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||| |||||||| || || || || || || || || || ||| Sbjct 37122 ATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATAACCCTGGAGGTCGAGCCCAGC 37063 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | ||| | || ||||| ||||| || || | || ||||| ||| Sbjct 37062 GACACCATCAAAAATGTGAAGGCTAAAATCCAGGACAAGGAGGGCATTCCACCAGACCAA 37003 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| ||||| || |||| |||| |||||| | |||||||||| Sbjct 37002 CAGCGTCTCATCTTTGCAGGCAAGCAGTTGGAGGACGGCCGCACTCTCTCCGATTACAAC 36943 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || || || Sbjct 36942 ATTCAGAAGGAATCGAC 36926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337205953022672