Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_031007.1 Length=223935 Score E Sequences producing significant alignments: (Bits) Value seq115183 116 5e-21 seq124163 87.8 3e-12 >seq115183 Length=152922 Score = 116 bits (128), Expect = 5e-21 Identities = 220/324 (68%), Gaps = 0/324 (0%) Strand=Plus/Minus Query 99852 AGTTATCGTGTCAGCTTTATCAACGCAGCGCCGATGTGTTCTTAGGGGTGCCGTTTAATA 99911 || |||| || ||||| || || ||||| |||||| | ||| | || ||||| || |||| Sbjct 137662 AGCTATCTTGCCAGCTCTACCAGCGCAGTGCCGATATTTTCCTGGGCGTGCCCTTCAATA 137603 Query 99912 TTGCGTCATACGCTTTGTTGATCCACATGTTTGCACAGCAGGCTAACATGACCGTGGGTG 99971 | || ||||| ||| ||| |||||| | || ||||| | | || ||||||| Sbjct 137602 TCGCCAGCTACGCCTTGCTGACTCACATGATGGCGCAGCAATGTGATCTGGAAGTGGGTG 137543 Query 99972 ATTTCGTCTGGTCTGGTGGTGACGTACATCTGTACAATAACCATCTGGAACAAACCCGTA 100031 ||||| ||||| ||||||||||| || |||||| ||||| | |||||| | Sbjct 137542 ATTTCATCTGGACTGGTGGTGACTGTCACCTGTACTCCAACCACTTCGAACAAGCAGAGC 137483 Query 100032 CCCAGTTAGGTCGTGCCCCGCGTCCGTTACCTAAGCTGATTATCAAACGTAAGCCAGACT 100091 ||| | || | || || || | || ||||||| ||||| || || || | | Sbjct 137482 TACAGCTCTCGCGCGAGCCTCGCCCCTACCCCAAGCTGACGATCAAGCGCAAACCCGCCA 137423 Query 100092 CCATCTTCGAATATAAGTTTGAAGACTTCGAACTTGAAGGCTACGACCCGCATCCTGCAA 100151 | ||||| || ||| |||||||||||| | | |||||| || ||||| | Sbjct 137422 GTCTGTTCGATTACGAGTACGAAGACTTCGAAATCACCGACTACGATCCTCATCCCCATA 137363 Query 100152 TCAAAGCACCGGTCGCGATATGAG 100175 |||| || || || || |||||| Sbjct 137362 TCAAGGCGCCTGTTGCCGTATGAG 137339 >seq124163 Length=12495 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 99309 TTATTCACGAACTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATA 99368 ||||| | ||| || | ||||| | ||||||||||| ||| | |||||||||||||| Sbjct 5317 TTATTTATGAATTGTTATGGTTTTTAAAAGGCGATACTAATATTCAATATTTAAATGATC 5258 Query 99369 ATGGTGTAACTATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACG 99428 ||||||| ||||| ||||| |||||| | || |||| || | ||||| | || | Sbjct 5257 ATGGTGTTACTATATGGGATGAATGGGCAGATGAACATGGAGAATTAGGACCCATTTATG 5198 Query 99429 GTAAACAGTGGCGGTCTTGGC 99449 | || || ||||| ||||| Sbjct 5197 GAAAGCAATGGCGTCATTGGC 5177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 714716866712800