Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq17548 104 3e-17 >seq17548 Length=139630 Score = 104 bits (114), Expect = 3e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 77942 AACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT 78001 ||| |||| || ||||||||||| | || ||||| | |||||| |||||||||||| Sbjct 1859 AACTTCATGCAGCCCAGGGCATTCGTGGGGACACATGAGCGACCAGACACCATCTTCCTC 1918 Query 78002 AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATG 78061 || || ||||| || || || || ||||| |||||| ||| | || || | || | Sbjct 1919 CACGCGCTTCATGAACAGGTCTGGGATCCAGAGAGCATAAAACAAGTCCCGAGCTCGAGT 1978 Query 78062 TTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGG 78121 ||| || || || || ||||| || || || || ||||| | || || | ||||| || Sbjct 1979 TTCCTCTTTGCCCGTGTTCTTCTTCAGCTCAAGGAACTCGAAGATGTCTGCGTGCCAGGG 2038 Query 78122 TTCTAGATATATTGCCATAACTCCAGG 78148 || || || || || | | |||| || Sbjct 2039 CTCCAGGTACATGGCAAAAGCTCCCGG 2065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692974815397760