Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq17548 104 3e-17 seq72223 91.5 2e-13 seq50140 91.5 2e-13 >seq17548 Length=139630 Score = 104 bits (114), Expect = 3e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 76537 AACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT 76596 ||| |||| || ||||| ||||| | |||||||| | ||||| |||||||||||| Sbjct 1859 AACTTCATGCAGCCCAGGGCATTCGTGGGGACACATGAGCGACCAGACACCATCTTCCTC 1918 Query 76597 AACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACG 76656 || || ||||| || || || || ||||| |||||| ||| | || || | || | Sbjct 1919 CACGCGCTTCATGAACAGGTCTGGGATCCAGAGAGCATAAAACAAGTCCCGAGCTCGAGT 1978 Query 76657 TTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGG 76716 ||| || || || || ||||| || || || |||||||| | || || | ||||| || Sbjct 1979 TTCCTCTTTGCCCGTGTTCTTCTTCAGCTCAAGGAACTCGAAGATGTCTGCGTGCCAGGG 2038 Query 76717 TTCTAGATATATCGCCATAACACCCGG 76743 || || || || || | | | ||||| Sbjct 2039 CTCCAGGTACATGGCAAAAGCTCCCGG 2065 Score = 104 bits (114), Expect = 3e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 ||||||| ||| || || |||||||| ||||| || || || || | ||||| | |||| Sbjct 8419 CTAAATACTTTCTTGGTCTCCTTGTGCAGATTAGAAACTGCAATACGGGCAGCCAAAATT 8478 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| |||| ||| || ||||||||| |||| || || ||| |||| | Sbjct 8479 GCATAGTCAGGGTGTTTTGTGGTCATGGTGGCTGCAGTTTCAGCTGCCAAATTATCCAGC 8538 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTC 77500 || | || |||||||| || | || | |||||||||| Sbjct 8539 TCAACCGTGGTAACTCCAGGGTACAAACCATTAATAACTTTC 8580 >seq72223 Length=2055 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 41829 ATTCCTTAACCTGTGACAGAGATCTCCAATCCATATTAGCACTTCCTAAATAAATATGCA 41888 |||| ||||||| | |||||| ||||| ||||| ||||||||||||| ||| || ||| Sbjct 1423 ATTCACTAACCTGAGTCAGAGACCTCCAGTCCATGTTAGCACTTCCTACATAGATGTGCT 1482 Query 41889 TATTATCAGATATCCAAAATTTTGTGTGAAGAACTCCA 41926 | || || ||||||||||||||||| ||||| ||| Sbjct 1483 TGTTGTCGACAATCCAAAATTTTGTGTGGAGAACACCA 1520 >seq50140 Length=27979 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 41829 ATTCCTTAACCTGTGACAGAGATCTCCAATCCATATTAGCACTTCCTAAATAAATATGCA 41888 |||| ||||||| | |||||| ||||| ||||| ||||||||||||| ||| || ||| Sbjct 19633 ATTCACTAACCTGAGTCAGAGACCTCCAGTCCATGTTAGCACTTCCTACATAGATGTGCT 19692 Query 41889 TATTATCAGATATCCAAAATTTTGTGTGAAGAACTCCA 41926 | || || ||||||||||||||||| ||||| ||| Sbjct 19693 TGTTGTCGACAATCCAAAATTTTGTGTGGAGAACACCA 19730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711195873818880