Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_031042.1 Length=111325 Score E Sequences producing significant alignments: (Bits) Value seq124163 91.5 1e-13 >seq124163 Length=12495 Score = 91.5 bits (100), Expect = 1e-13 Identities = 194/280 (69%), Gaps = 11/280 (4%) Strand=Plus/Plus Query 14694 ACGTTTCATTTGCTCTTCTACTTGCTCCATATGATCACTATAAATATGCGTATCTCCCCC 14753 |||| || |||||| | |||||||||| ||||| | | |||||||| ||| || || Sbjct 4815 ACGTGACAATTGCTCGTGAACTTGCTCCAAATGATTATTGTAAATATGACAATCGCCTCC 4874 Query 14754 --ACTAAAGATAAGATAACGTGGTTTTAATCCAGTCAGTTTTGCCAGGATATGTGTTAAT 14811 || ||| ||| | | | ||||| || | | |||| ||||| |||||| Sbjct 4875 CGACCAAA--TAAATTCTCCTACCTTTAAATCACATTGCTCAGCCACCATATGCGTTAAT 4932 Query 14812 AAAGCATAACTAGCAATATTGAAAGGTAGGCCTAGAAAACAGTCTACAGAACGTTGTGTC 14871 ||||||||| ||||||||| ||||||| |||| |||| ||| | || ||||| ||| Sbjct 4933 AAAGCATAAGAAGCAATATTAAAAGGTACACCTAAAAAAGCATCTGCTGACCGTTGGGTC 4992 Query 14872 CATTTAAGATCTAAGT-ATCCATCATTACTTACGTAACACTGGAAACCAT-AGTGACATG 14929 |||| | | || | || |||| || || |||| | | ||||| | | ||||||| Sbjct 4993 AATTT-ACAGGAAATTGTTCTATCA--AC-TATGTAA-AATTGAAACAGTAAATGACATG 5047 Query 14930 GTGGTAATGCCATCTTATCCAATTCAGCAACGTTCCATGC 14969 | || || ||||| | || ||||| | || ||||| || Sbjct 5048 GCGGCAAGGCCATTTGATTTAATTCCCCTACATTCCAAGC 5087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355268505397064