Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_031043.1 Length=229501 Score E Sequences producing significant alignments: (Bits) Value seq115183 114 2e-20 >seq115183 Length=152922 Score = 114 bits (126), Expect = 2e-20 Identities = 220/322 (68%), Gaps = 2/322 (1%) Strand=Plus/Minus Query 100167 CTGTCCTGTCAACTCTACCAACGTAGCGCGGACGTGTTCTTAGGTGTGCCGTTCAATATC 100226 || || || || |||||||| || || || || | ||| | || ||||| ||||||||| Sbjct 137660 CTATCTTGCCAGCTCTACCAGCGCAGTGCCGATATTTTCCTGGGCGTGCCCTTCAATATC 137601 Query 100227 GCGTCGTACGCTCTGCTGGTTCACATGTTTGCACAACAAGCCAACATGGCCGTGGGCGAC 100286 || ||||| ||||| ||||||| | || || ||| | ||| ||||| || Sbjct 137600 GCCAGCTACGCCTTGCTGACTCACATGATGGCGCAGCAATGTGATCTGGAAGTGGGTGAT 137541 Query 100287 TTCGTCTGGACGGGTGGTGACGTACATCTGTATTCCAACCATCTGGAACAGACACGTACT 100346 ||| ||||||| ||||||||| || ||||| |||||||| | ||||| || | || Sbjct 137540 TTCATCTGGACTGGTGGTGACTGTCACCTGTACTCCAACCACTTCGAACAAGCA-GAGCT 137482 Query 100347 -CAGCTAGGACGCACTCCGCGCACATTACCTAAATTGGTTATCAACCGTAAGCCTGACTC 100405 ||||| ||| || ||| | | || || || ||||| || || || | | Sbjct 137481 ACAGCTCTCGCGCGAGCCTCGCCCCTACCCCAAGCTGACGATCAAGCGCAAACCCGCCAG 137422 Query 100406 TATCTTCGACTATAAGTTTGAAGACTTCGAGATTGAGGACTACGAGCCTTACCCCGCCAT 100465 | | ||||| || ||| ||||||||||| || |||||||| ||| | ||| || Sbjct 137421 TCTGTTCGATTACGAGTACGAAGACTTCGAAATCACCGACTACGATCCTCATCCCCATAT 137362 Query 100466 TAAAGCGCCGGTGGCGATATGA 100487 || ||||| || || ||||| Sbjct 137361 CAAGGCGCCTGTTGCCGTATGA 137340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 732484633211040