Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq115183 210 1e-49 >seq115183 Length=152922 Score = 210 bits (232), Expect = 1e-49 Identities = 541/807 (67%), Gaps = 33/807 (4%) Strand=Plus/Minus Query 785 CCCTACGAAGACCTGTTGCGCGACATCCTGGAGACT-GGCAAGTCGAAGGATGATCGCAC 843 ||||||||||||||| ||||| || | | | |||| | || | || ||||| Sbjct 138128 CCCTACGAAGACCTGCTGCGCCTGGTC-TACACCCAAGGCACTCCCAAAGGGGACCGCAC 138070 Query 844 CGGCACCGGCACG--CTGAGCAAGTTCGGCGCCCAGCTGCGGTACGACCTCACCGAGGGC 901 ||||||||||||| || | | || ||| ||| |||| | ||| || | |||| Sbjct 138069 CGGCACCGGCACGAACTCGGTA--TTTGGCCACCAAATGCGCTTCGATCTGTCGCAGGGT 138012 Query 902 TTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTAC-----GAACTTC 956 ||||||||| ||||||| ||| ||| || | | | || | || | | Sbjct 138011 TTCCCGCTGATCACCACCAAGAA-----ACTGCATACCCGCAGCATCTTTATTGAGTTGC 137957 Query 957 TGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCGTCACCATCT 1016 ||||||| | |||| || | || ||| ||| | || |||||| ||||||| Sbjct 137956 TGTGGTTTTTGCGTGGTGAGTCCAATGTGCGCTGGCTGCAAGAGCGCGGCGTAACCATCT 137897 Query 1017 GGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAGTGGCGGC 1076 ||||||| ||||||||| | ||| || || || || ||||| || | ||| ||||| Sbjct 137896 GGGACGAATGGGCCGACAAGGACGGCAATCTGGGCCCGGTCTATGGTGTGCAATGGCGTT 137837 Query 1077 ACTGGCATGTCGAGGACGGAGGATCGTCGTGGATTGACCAGATCTCGGCCGCC-GTGGAG 1135 ||||| | | | || | |||| | |||||||||||| | | | ||||| Sbjct 137836 CCTGGCCT----ACTCCCGATGGCCGTCAT--ATTGACCAGATCA-GCCAGTTAGTGGAA 137784 Query 1136 CTGCTTCGCGAGGACCCTGACTCGCGCCGGAACGTGGTATCCGCATGGAACGTCGGTGAC 1195 | | | ||| || | || ||||| ||||| | || || || |||||||| | || Sbjct 137783 CAGATCCGCAAGAATCCCGACTCACGCCGCCTGATTGTTTCGGCCTGGAACGTAGCGGAT 137724 Query 1196 CTCAGCGACATGGCACTTCACCCGTGCCACATCATGTTCCAGCTGTACGTCGTCGACGGC 1255 | || | ||||| || | ||| |||||| | |||||||| | || || | |||||| Sbjct 137723 GTGGGCCAGATGGCCCTGCCCCCATGCCACGCCCTGTTCCAGTTTTATGTGGCAGACGGC 137664 Query 1256 CGGCTCTCGCTGCAGGTCTACCAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCAAT 1315 ||| || ||| ||||||||||||| || || || ||||| || ||||| |||||| Sbjct 137663 AAGCTATCTTGCCAGCTCTACCAGCGCAGTGCCGATATTTTCCTGGGCGTGCCCTTCAAT 137604 Query 1316 ATCGCCTCGTACGCGCTCCTCGCGCACATGTTCGCGCAGCAGGCCGGCCTGCGGGTGGGT 1375 |||||| ||||| | || | |||||| | |||||||| | ||| |||||| Sbjct 137603 ATCGCCAGCTACGCCTTGCTGACTCACATGATGGCGCAGCAATGTGATCTGGAAGTGGGT 137544 Query 1376 GAGCTGATCTGGACCGGCGGCGACTGCCACATCTACAACAACCACGTCGACCAGGCGCTG 1435 || | |||||||| || || ||||| ||| | ||| ||||||| |||| || || | Sbjct 137543 GATTTCATCTGGACTGGTGGTGACTGTCACCTGTACTCCAACCACTTCGAACAAGCAGAG 137484 Query 1436 ATGCAGCTCCGCCGACGA-CCGCGGCCCTACCCGAGGCT--CGTGCTA-CAC-CACGCGC 1490 | |||||| || ||| || || |||||||| | ||| || | | | | || ||| Sbjct 137483 CTACAGCTCTCGCG-CGAGCCTCGCCCCTACCCCAAGCTGACGATCAAGCGCAAACCCGC 137425 Query 1491 C-GTCGATCTTCGACTACCGGTACGAGCACATCCACCTCGTGAACTACGACCCGCACCCG 1549 | ||| | ||||| ||| |||||| || || | || ||||||| || || || Sbjct 137424 CAGTC--TGTTCGATTACGAGTACGAAGACTTCGAAATCACCGACTACGATCCTCATCCC 137367 Query 1550 TCGATCAAGGCGCCGGTGGCCGTCTGA 1576 ||||||||||| || ||||| ||| Sbjct 137366 CATATCAAGGCGCCTGTTGCCGTATGA 137340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 295427122530684