Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq121339 156 1e-33 seq115184 132 2e-26 >seq121339 Length=12531 Score = 156 bits (172), Expect = 1e-33 Identities = 209/291 (72%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 40132 CGTACCTGATCACGTCGCCCCGTCGCCGGTCATCGAAGTCGATGTCAACGTCGGGCATGG 40191 |||| | |||||| || | || ||| || ||||||||| || | || ||||| | Sbjct 1 CGTAGCGGATCACCTCCACGCGCCGCGTTTCGCAGAAGTCGATATCGAAATCCGGCATCG 60 Query 40192 ACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGT 40251 | ||||||||||| || ||||| |||||||| | || ||| | |||| || || |||| Sbjct 61 AGACGCGCTCGGGATTGAGGAAGCGCTCGAACAGCAGGCCGAGGCGGATCGGATCGAGGT 120 Query 40252 CTGTGATGCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGA 40311 | || ||| || | | || |||| ||||||||| |||| || || || || |||| Sbjct 121 CGGTAATGGTCAGCGACCATGCCACCACCGAACCGGCGCCCGAACCGCGCCCCGGCCCGA 180 Query 40312 CCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACG 40371 || | | || ||||||||||| |||||||||||| |||| ||||||||| | Sbjct 181 CCGGGATGTCGCGTTCCTTGGCCCATTTGATGAAGTCGGCAACGATCAGGAAGTATCCGG 240 Query 40372 GGAACCCCAGCTGGATGATCATGTCGATCTCGTACTGAAGCTGCTTGCCAT 40422 |||| |||| ||||||||| | || | |||| ||| | | |||||| || Sbjct 241 GGAAGCCCATCTGGATGATGACATCCAGCTCGAACTCCAACCGCTTGCGAT 291 >seq115184 Length=93111 Score = 132 bits (146), Expect = 2e-26 Identities = 156/210 (74%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 40166 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40225 |||||| | ||||| ||| ||||||||||| ||||| ||||||||||| || ||||| | Sbjct 86987 GAAGTCCACGTCAAAGTCAGGCATGGACACCCGCTCAGGGTTCAGGAAACGTTCGAACAG 87046 Query 40226 GAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACC 40285 | | | | | ||| ||||| || || || || | || |||||| ||||| ||||| Sbjct 87047 CAAGTCATAGCGCAAGGGATCCAGATCAGTAATCCCCATGCTGTAGGCCACCAGGGAACC 87106 Query 40286 GGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAA 40345 || |||| || || || || || || |||||| || | |||| ||||| ||||| Sbjct 87107 CGCCCCCGAACCCCGACCCGGCCCTACGGGCACGCCATTGTGCTTGCCCCAGTTAATGAA 87166 Query 40346 GTCGGCGACGACCAGGAAGTAGGACGGGAA 40375 ||| || |||| ||||||||| | |||||| Sbjct 87167 GTCCGCCACGATCAGGAAGTA-GCCGGGAA 87195 Score = 89.7 bits (98), Expect = 2e-13 Identities = 213/317 (67%), Gaps = 20/317 (6%) Strand=Plus/Plus Query 39025 ACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGACCGTACGCCG 39084 |||||||||| | ||| | || || | ||||| | ||||| |||||| |||| || | Sbjct 85873 ACTCGGCCGGATGGTGGGCTTTAAGCCAGGCCGTCTGATAGGCAATGAGAGCGTAAGCAG 85932 Query 39085 CAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACA------ 39138 | ||||| |||||| ||| | || || || || | | | || ||| ||| Sbjct 85933 CGGAGTGACTCTTGTTAAAGCCATAGCCTGCAAACTTTTCCATCAGGTCAAACAGCTTGA 85992 Query 39139 CCGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGA 39198 ||||| || || ||| || |||| || | ||| || | || || || || Sbjct 85993 CCGCCA--ATT-CAGGGTC---GTGGCCTTTCTTGACCGCCCCTTCCTCAAA---CA-GA 86042 Query 39199 ACTC----CTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCTCGGCGGAGAAGGTCG 39254 || | |||||||| |||||||||| |||||||||||||| || || || | |||| Sbjct 86043 ACCCGGTGCTTGGCCATCTCCTCGGGCTTTTTCTTGCCCATGGCACGACGCAGCAAGTCG 86102 Query 39255 GCCTGACCCAGGCTGTACCCAGCGAGGATCTGTGCCGCCTTCTGCACCTGCTCCTGGTAG 39314 || |||||| ||| ||| ||| ||||| | | | |||||| ||||||||| Sbjct 86103 GCACCACCCAGCGAGTAGCCACCGATAATCTGCGAGATCAGCATCACCTGTTCCTGGTAG 86162 Query 39315 ATGACCAGCCCGTAGGT 39331 | || | ||||||||| Sbjct 86163 ACGATGACCCCGTAGGT 86179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159769814219552